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    POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Varanus komodoensis (Komodo dragon) ]

    Gene ID: 123029031, updated on 22-Mar-2024

    Summary

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    Gene symbol
    POMGNT1
    Gene description
    protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
    Locus tag
    EYD10_01341
    See related
    Ensembl:ENSVKKG00000002654
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varanus komodoensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
    Orthologs
    human mouse all
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    Genomic context

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    See POMGNT1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025335268.1 (116086165..116117730)

    NW_025335268.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123033860 Neighboring gene leucine rich adaptor protein 1 Neighboring gene tetraspanin 1 Neighboring gene phosphatidylinositol 3-kinase regulatory subunit alpha-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025335268 Unplaced Scaffold Reference ASM479886v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in O-glycan processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
    Names
    Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM479886v1

    Genomic

    1. NW_025335268.1 Reference ASM479886v1

      Range
      116086165..116117730
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044441503.1 → XP_044297438.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

      UniProtKB/TrEMBL
      A0A8D2IQI9
      Conserved Domains (2) summary
      cd02514
      Location:294 → 621
      GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
      cd13937
      Location:92 → 239
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

    2. XM_044441495.1 → XP_044297430.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

      UniProtKB/TrEMBL
      A0A8D2IQI9
      Conserved Domains (2) summary
      cd02514
      Location:294 → 621
      GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
      cd13937
      Location:92 → 239
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

    3. XM_044441512.1 → XP_044297447.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

      UniProtKB/TrEMBL
      A0A8D2IQI9
      Related
      ENSVKKP00000003810.1, ENSVKKT00000003916.1
      Conserved Domains (2) summary
      cd02514
      Location:294 → 621
      GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
      cd13937
      Location:92 → 239
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
    Nucleotide Protein
    Heading Accession and Version

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