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    PYGM glycogen phosphorylase, muscle associated [ Varanus komodoensis (Komodo dragon) ]

    Gene ID: 123032693, updated on 22-Mar-2024

    Summary

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    Gene symbol
    PYGM
    Gene description
    glycogen phosphorylase, muscle associated
    See related
    Ensembl:ENSVKKG00000014707
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Varanus komodoensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Anguimorpha; Paleoanguimorpha; Varanoidea; Varanidae; Varanus
    Orthologs
    human mouse all
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    Genomic context

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    See PYGM in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current ASM479886v1 (GCF_004798865.1) Unplaced Scaffold NW_025336157.1 (1045974..1065969)

    NW_025336157.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase kinase 2 Neighboring gene splicing factor 1 Neighboring gene RAS guanyl releasing protein 2 Neighboring gene uncharacterized LOC123032549 Neighboring gene phosphoethanolamine N-methyltransferase 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025336157 Unplaced Scaffold Reference ASM479886v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycogen phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycogen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycogen phosphorylase, muscle form

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Varanus komodoensis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM479886v1

    Genomic

    1. NW_025336157.1 Reference ASM479886v1

      Range
      1045974..1065969
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044448790.1 → XP_044304725.1  glycogen phosphorylase, muscle form

      UniProtKB/TrEMBL
      A0A8D2Q5Y5
      Related
      ENSVKKP00000022012.1, ENSVKKT00000022559.1
      Conserved Domains (1) summary
      cd04300
      Location:29 → 828
      GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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