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    LOC123219302 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [ Mangifera indica (mango) ]

    Gene ID: 123219302, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123219302
    Gene description
    protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mangifera indica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Anacardiaceae; Mangifera
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    Genomic context

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    See LOC123219302 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current CATAS_Mindica_2.1 (GCF_011075055.1) 6 NC_058142.1 (2155444..2162569, complement)

    Chromosome 6 - NC_058142.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123218722 Neighboring gene trihelix transcription factor ASIL2-like Neighboring gene protein SCAR1-like Neighboring gene dof zinc finger protein DOF1.5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058142.1 Chromosome 6 Reference CATAS_Mindica_2.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mangifera indica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CATAS_Mindica_2.1

    Genomic

    1. NC_058142.1 Reference CATAS_Mindica_2.1

      Range
      2155444..2162569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044641171.1 → XP_044497106.1  protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

    2. XM_044641172.1 → XP_044497107.1  protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

    Nucleotide Protein
    Heading Accession and Version

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