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    KDM4B lysine demethylase 4B [ Gracilinanus agilis (Agile Gracile Mouse Opossum) ]

    Gene ID: 123242851, updated on 22-Mar-2024

    Summary

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    Gene symbol
    KDM4B
    Gene description
    lysine demethylase 4B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gracilinanus agilis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Gracilinanus
    Orthologs
    human mouse all
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    Genomic context

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    See KDM4B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current AgileGrace (GCF_016433145.1) 1 NC_058130.1 (715520814..715835742, complement)

    Chromosome 1 - NC_058130.1Genomic Context describing neighboring genes Neighboring gene zinc and ring finger 4 Neighboring gene protein tyrosine phosphatase receptor type S Neighboring gene ubiquitin like with PHD and ring finger domains 1 Neighboring gene perilipin 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058130.1 Chromosome 1 Reference AgileGrace Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 4B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gracilinanus agilis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AgileGrace Primary Assembly

    Genomic

    1. NC_058130.1 Reference AgileGrace Primary Assembly

      Range
      715520814..715835742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_044670970.1 → XP_044526905.1  lysine-specific demethylase 4B

      Conserved Domains (6) summary
      smart00545
      Location:15 → 56
      JmjN; Small domain found in the jumonji family of transcription factors
      PTZ00121
      Location:364 → 476
      PTZ00121; MAEBL; Provisional
      smart00333
      Location:1012 → 1067
      TUDOR; Tudor domain
      smart00558
      Location:147 → 206
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cd15576
      Location:720 → 825
      PHD_JMJD2B; PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
      cd15714
      Location:834 → 943
      ePHD_JMJD2B; Extended PHD finger found in Jumonji domain-containing protein 2B (JMJD2B)
    Nucleotide Protein
    Heading Accession and Version

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