U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    F16A11.1 RING finger and SPRY domain-containing protein 1 [ Caenorhabditis elegans ]

    Gene ID: 172764, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    F16A11.1
    Official Full Name
    RING finger and SPRY domain-containing protein 1
    Primary source
    WormBase:WBGene00008876
    Locus tag
    CELE_F16A11.1
    See related
    AllianceGenome:WB:WBGene00008876
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteolysis involved in protein catabolic process. Predicted to be active in cytoplasm. Is expressed in body wall musculature; hypodermis; nervous system; and reproductive system. Orthologous to human RSPRY1 (ring finger and SPRY domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See F16A11.1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    9
    Sequence:
    Chromosome: I; NC_003279.8 (9393761..9404039, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Serine/threonine-protein phosphatase 4 regulatory subunit 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RNA-splicing ligase RtcB homolog Neighboring gene pseudo Neighboring gene THUMP domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Interactions within the ubiquitin pathway of Caenorhabditis elegans. Gudgen M, et al. Biochem Biophys Res Commun, 2004 Dec 10. PMID 15530417
    2. Intestinal tube formation in Caenorhabditis elegans requires vang-1 and egl-15 signaling. Hoffmann M, et al. Dev Biol, 2010 Mar 15. PMID 20004187
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ubiquitin-protein transferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING finger and SPRY domain-containing protein 1
    NP_001129765.1
    • Confirmed by transcript evidence
    NP_492499.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      9393761..9404039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_060098.6 → NP_492499.1  RING finger and SPRY domain-containing protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_492499.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      P90839
      Conserved Domains (2) summary
      pfam13920
      Location:561 → 605
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      cd12883
      Location:393 → 516
      SPRY_RING; SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain

    2. NM_001136293.3 → NP_001129765.1  RING finger and SPRY domain-containing protein 1 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001129765.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3WFX6
      Conserved Domains (2) summary
      pfam13920
      Location:509 → 553
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
      cd12883
      Location:341 → 464
      SPRY_RING; SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools