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    LOC123361615 histone-lysine N-methyltransferase PRDM9-like [ Mauremys mutica (yellowpond turtle) ]

    Gene ID: 123361615, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC123361615
    Gene description
    histone-lysine N-methyltransferase PRDM9-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mauremys mutica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
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    Genomic context

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    See LOC123361615 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current ASM2049712v1 (GCF_020497125.1) Unplaced Scaffold NW_025423358.1 (11989..27043, complement)

    NW_025423358.1Genomic Context describing neighboring genes Neighboring gene CD79a molecule Neighboring gene proline rich 19 Neighboring gene toll-like receptor 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_025423358 Unplaced Scaffold Reference ASM2049712v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K36 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables recombination hotspot binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase PRDM9-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mauremys mutica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2049712v1 Primary Assembly

    Genomic

    1. NW_025423358.1 Reference ASM2049712v1 Primary Assembly

      Range
      11989..27043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045001646.1 → XP_044857581.1  histone-lysine N-methyltransferase PRDM9-like isoform X4

      Conserved Domains (4) summary
      COG5048
      Location:421 → 741
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:529 → 549
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:224 → 352
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      cl02581
      Location:52 → 100
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    2. XM_045001645.1 → XP_044857580.1  histone-lysine N-methyltransferase PRDM9-like isoform X3

      Conserved Domains (4) summary
      COG5048
      Location:541 → 755
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:683 → 703
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:266 → 394
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      cl02581
      Location:52 → 100
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    3. XM_045001647.1 → XP_044857582.1  histone-lysine N-methyltransferase PRDM9-like isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:443 → 763
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:551 → 571
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:246 → 374
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      cl02581
      Location:32 → 80
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    4. XM_045001642.1 → XP_044857577.1  histone-lysine N-methyltransferase PRDM9-like isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:443 → 763
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:551 → 571
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:246 → 374
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      cl02581
      Location:32 → 80
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    5. XM_045001641.1 → XP_044857576.1  histone-lysine N-methyltransferase PRDM9-like isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:463 → 783
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:571 → 591
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:266 → 394
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      cl02581
      Location:52 → 100
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    6. XM_045001644.1 → XP_044857579.1  histone-lysine N-methyltransferase PRDM9-like isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:443 → 763
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:551 → 571
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:246 → 374
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      cl02581
      Location:32 → 80
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    7. XM_045001643.1 → XP_044857578.1  histone-lysine N-methyltransferase PRDM9-like isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:443 → 763
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:551 → 571
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19193
      Location:246 → 374
      PR-SET_PRDM7_9; PR-SET domain found in PR domain zinc finger protein 7 (PRDM7) and 9 (PRDM9) and similar proteins
      cl02581
      Location:32 → 80
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

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