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    METTL15 methyltransferase 15, mitochondrial 12S rRNA N4-cytidine [ Gallus gallus (chicken) ]

    Gene ID: 421606, updated on 8-Dec-2024

    Summary

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    Official Symbol
    METTL15provided by CGNC
    Official Full Name
    methyltransferase 15, mitochondrial 12S rRNA N4-cytidineprovided by CGNC
    Primary source
    CGNC:9221
    See related
    Ensembl:ENSGALG00010022379
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    METT5D1; METTL15P1
    Orthologs
    human mouse all
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    Genomic context

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    See METTL15 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (4105922..4221881)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (4071433..4187394)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene microRNA 1760 Neighboring gene uncharacterized LOC121110840 Neighboring gene kinesin family member 18A Neighboring gene uncharacterized LOC107053347 Neighboring gene uncharacterized LOC121110841

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA (cytosine-N4-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    12S rRNA N(4)-cytidine methyltransferase METTL15; 12S rRNA N4-methylcytidine (m4C) methyltransferase
    Names
    methyltransferase 5 domain containing 1
    methyltransferase like 15 pseudogene 1
    putative S-adenosyl-L-methionine-dependent methyltransferase METT5D1
    NP_001186351.1
    NP_001384339.1
    NP_001384340.1
    XP_025006407.2
    XP_025006408.1
    XP_025006409.1
    XP_040556696.1
    XP_046773969.1
    XP_046773970.1
    XP_046773971.1
    XP_046773972.1
    XP_046773973.1
    XP_046797515.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199422.2 → NP_001186351.1  12S rRNA N(4)-cytidine methyltransferase METTL15 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000212
      UniProtKB/TrEMBL
      A0A1D5PLE8
      Related
      ENSGALP00010032868.1, ENSGALT00010054415.1
      Conserved Domains (1) summary
      PRK00050
      Location:74 → 409
      PRK00050; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH

    2. NM_001397410.1 → NP_001384339.1  12S rRNA N(4)-cytidine methyltransferase METTL15 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000212
      UniProtKB/TrEMBL
      A0A1D5PLE8
      Conserved Domains (1) summary
      PRK00050
      Location:74 → 409
      PRK00050; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH

    3. NM_001397411.1 → NP_001384340.1  12S rRNA N(4)-cytidine methyltransferase METTL15 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000212
      Conserved Domains (1) summary
      cl17173
      Location:74 → 261
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4105922..4221881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025150640.3 → XP_025006408.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X1

      Conserved Domains (1) summary
      PRK00050
      Location:74 → 417
      PRK00050; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH

    2. XM_046941559.1 → XP_046797515.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X3

    3. XM_025150639.3 → XP_025006407.2  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X1

      Conserved Domains (1) summary
      PRK00050
      Location:74 → 417
      PRK00050; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH

    4. XM_025150641.3 → XP_025006409.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X1

      Conserved Domains (1) summary
      PRK00050
      Location:74 → 417
      PRK00050; 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH

    5. XM_040700762.1 → XP_040556696.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X2

      Conserved Domains (1) summary
      cl17173
      Location:6 → 329
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4071433..4187394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046918013.1 → XP_046773969.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X1

    2. XM_046918017.1 → XP_046773973.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X3

    3. XM_046918014.1 → XP_046773970.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X1

    4. XM_046918015.1 → XP_046773971.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X1

    5. XM_046918016.1 → XP_046773972.1  12S rRNA N4-methylcytidine (m4C) methyltransferase isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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