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    LOC4334062 protein WRKY1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334062, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334062
    Gene description
    protein WRKY1
    Locus tag
    OSNPB_030741400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334062 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (31304718..31307924)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30422177..30425388)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene DNA repair protein XRCC4 Neighboring gene transcription factor BHLH148-like Neighboring gene uncharacterized LOC136355714 Neighboring gene acyl-[acyl-carrier-protein] desaturase 7, chloroplastic-like Neighboring gene premnaspirodiene oxygenase-like Neighboring gene PRA1 family protein F3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein WRKY1
    Names
    Os03g0741400
    WRKY transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      31304718..31307924
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777433.3 → XP_015632919.1  protein WRKY1

      UniProtKB/TrEMBL
      B9FBR0, Q0DNQ1, Q75KW2
      Conserved Domains (2) summary
      smart00774
      Location:320 → 378
      WRKY; DNA binding domain
      pfam10533
      Location:283 → 318
      Plant_zn_clust; Plant zinc cluster domain
    Nucleotide Protein
    Heading Accession and Version

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