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    hpnJ hopanoid biosynthesis associated radical SAM protein HpnJ [ Azotobacter vinelandii DJ ]

    Gene ID: 88185295, updated on 12-Dec-2024

    Summary

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    Gene symbol
    hpnJ
    Gene description
    hopanoid biosynthesis associated radical SAM protein HpnJ
    Locus tag
    AVIN_RS09495
    Gene type
    protein coding
    Organism
    Azotobacter vinelandii DJ (strain: DJ; ATCC BAA-1303, culture-collection: ATCC:BAA-1303)
    Lineage
    Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter
    Old locus tag
    Avin_20660
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    Genomic context

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    Sequence:
    NC_012560.1 (2056368..2057876)

    NC_012560.1Genomic Context describing neighboring genes Neighboring gene adenosyl-hopene transferase HpnH Neighboring gene isopentenyl-diphosphate Delta-isomerase Neighboring gene bacteriohopanetetrol glucosamine biosynthesis glycosyltransferase HpnI Neighboring gene flippase-like domain-containing protein Neighboring gene hopanoid biosynthesis-associated protein HpnK Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012560.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elucidation of the Burkholderia cenocepacia hopanoid biosynthesis pathway uncovers functions for conserved proteins in hopanoid-producing bacteria. Schmerk CL, et al. Environ Microbiol, 2015 Mar. PMID 24888970
    2. Cloning of conserved genes from Zymomonas mobilis and Bradyrhizobium japonicum that function in the biosynthesis of hopanoid lipids. Perzl M, et al. Biochim Biophys Acta, 1998 Jul 31. PMID 9714766
    3. Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. Haft DH, et al. BMC Biol, 2006 Aug 24. PMID 16930487, Free PMC Article
    4. Genome sequence of Azotobacter vinelandii, an obligate aerobe specialized to support diverse anaerobic metabolic processes. Setubal JC, et al. J Bacteriol, 2009 Jul. PMID 19429624, Free PMC Article
    5. Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Sofia HJ, et al. Nucleic Acids Res, 2001 Mar 1. PMID 11222759, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    hopanoid biosynthesis associated radical SAM protein HpnJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012560.1 Reference assembly

      Range
      2056368..2057876
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. WP_231876429.1 MULTISPECIES: hopanoid biosynthesis associated radical SAM protein HpnJ [Azotobacter]