U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    afg1lb AFG1 like ATPase b [ Takifugu rubripes (torafugu) ]

    Gene ID: 101072490, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    afg1lb
    Gene description
    AFG1 like ATPase b
    See related
    Ensembl:ENSTRUG00000032686
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Also known as
    afg1l; lace1
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See afg1lb in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 16 NC_042300.1 (11991963..12008180)
    101 previous assembly FUGU5 (GCF_000180615.1) 16 NC_018905.1 (9611481..9632914)

    Chromosome 16 - NC_042300.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115252974 Neighboring gene nuclear receptor subfamily 2, group E, member 1 Neighboring gene sorting nexin 3 Neighboring gene forkhead box O3b Neighboring gene armadillo repeat containing 2 Neighboring gene sestrin 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    AFG1-like ATPase
    Names
    lactation elevated 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042300.1 Reference fTakRub1.2 Primary Assembly

      Range
      11991963..12008180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029849867.1 → XP_029705727.1  AFG1-like ATPase isoform X2

      Conserved Domains (1) summary
      COG1485
      Location:71 → 499
      YhcM; Predicted ATPase [General function prediction only]

    2. XM_003971884.3 → XP_003971933.3  AFG1-like ATPase isoform X1

      UniProtKB/TrEMBL
      A0A674NLZ0
      Related
      ENSTRUP00000074791.1, ENSTRUT00000088386.1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.