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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001286999.2 → NP_001273928.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform b
See identical proteins and their annotated locations for NP_001273928.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is longer than isoform a.
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS69669.1
- UniProtKB/Swiss-Prot
-
Q969X2
- Related
- ENSP00000362235.1, ENST00000373142.5
- Conserved Domains (1) summary
-
- pfam00777
Location:102 → 266
- Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
-
NM_001287000.2 → NP_001273929.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform c precursor
See identical proteins and their annotated locations for NP_001273929.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' region, resulting in translation initiation from a downstream in-frame start codon, compared to variant 1. The encoded isoform (c) is shorter at the N-terminus, compared to isoform a. Variants 3, 4, 5 and 10 all encode isoform c.
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS69668.1
- UniProtKB/TrEMBL
-
A0A2R8YFX0
- Related
- ENSP00000362237.3, ENST00000373144.7
- Conserved Domains (1) summary
-
- pfam00777
Location:68 → 253
- Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
-
NM_001287001.2 → NP_001273930.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform c precursor
See identical proteins and their annotated locations for NP_001273930.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation from a downstream in-frame start codon, compared to variant 1. The encoded isoform (c) is shorter at the N-terminus, compared to isoform a. Variants 3, 4, 5 and 10 all encode isoform c.
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS69668.1
- UniProtKB/TrEMBL
-
A0A2R8YFX0
- Related
- ENSP00000362234.1, ENST00000373141.5
- Conserved Domains (1) summary
-
- pfam00777
Location:68 → 253
- Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
-
NM_001287002.2 → NP_001273931.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform c precursor
See identical proteins and their annotated locations for NP_001273931.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation from a downstream in-frame start codon, compared to variant 1. The encoded isoform (c) is shorter at the N-terminus, compared to isoform a. Variants 3, 4, 5 and 10 all encode isoform c.
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS69668.1
- UniProtKB/TrEMBL
-
A0A2R8YFX0
- Related
- ENSP00000477575.1, ENST00000622357.5
- Conserved Domains (1) summary
-
- pfam00777
Location:68 → 253
- Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
-
NM_001287003.2 → NP_001273932.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform d precursor
See identical proteins and their annotated locations for NP_001273932.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, lacks a portion of the 5' coding region, initiates translation from a downstream in-frame start codon, and lacks an exon that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (d) has a distinct C-terminus and is shorter than isoform a. Variants 6 and 11 encode isoform d.
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS75908.1
- UniProtKB/TrEMBL
-
F6SGE3
- Related
- ENSP00000438109.2, ENST00000542456.5
-
NM_001388489.1 → NP_001375418.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform c precursor
Status: VALIDATED
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS69668.1
- UniProtKB/TrEMBL
-
A0A2R8YFX0
- Conserved Domains (1) summary
-
- pfam00777
Location:68 → 253
- Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
-
NM_001400830.1 → NP_001387759.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform e
Status: VALIDATED
- Source sequence(s)
-
AL157935
- UniProtKB/TrEMBL
-
A0A2R8YFX0
-
NM_001400831.1 → NP_001387760.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform c precursor
Status: VALIDATED
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS69668.1
- UniProtKB/TrEMBL
-
A0A2R8YFX0
-
NM_001400832.1 → NP_001387761.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform d precursor
Status: VALIDATED
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS75908.1
- UniProtKB/TrEMBL
-
F6SGE3
-
NM_001400833.1 → NP_001387762.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform f precursor
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NM_001400834.1 → NP_001387763.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform f precursor
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NM_001400835.1 → NP_001387764.1 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform f precursor
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NM_013443.5 → NP_038471.2 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 isoform a
See identical proteins and their annotated locations for NP_038471.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes isoform a.
- Source sequence(s)
-
AL157935
- Consensus CDS
-
CCDS6882.1
- UniProtKB/Swiss-Prot
- B3KQ01, Q5T9C4, Q5T9C5, Q969X2, Q9H8A2, Q9ULB8
- UniProtKB/TrEMBL
- A0A0S2Z5G9, A0A2R8YFX0
- Related
- ENSP00000362239.1, ENST00000373146.6
- Conserved Domains (1) summary
-
- pfam00777
Location:96 → 287
- Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
RNA
-
NR_104629.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) has alternate 5' exon structure and uses two alternate splice sites in the 3' region, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL157935
-
NR_174612.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NR_174613.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NR_174614.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NR_174615.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
- Related
-
ENST00000291839.10
-
NR_174616.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NR_174617.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NR_174618.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NR_174619.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NR_174620.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
-
NR_174621.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AL157935
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
127885321..127906616 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
140093108..140114388 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)