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    GPCPD1 glycerophosphocholine phosphodiesterase 1 [ Gallus gallus (chicken) ]

    Gene ID: 421311, updated on 10-Oct-2024

    Summary

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    Symbol
    GPCPD1provided by CGNC
    Full Name
    glycerophosphocholine phosphodiesterase 1provided by CGNC
    Primary source
    CGNC:51467
    See related
    Ensembl:ENSGALG00010017352
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See GPCPD1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (16449733..16491789, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (16364364..16406493, complement)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase kinase 3 Neighboring gene uncharacterized LOC121110398 Neighboring gene THUMP domain containing 2 Neighboring gene chromogranin B Neighboring gene microRNA 7464 Neighboring gene tRNA methyltransferase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Hubbard SJ, et al. Genome Res, 2005 Jan. PMID 15590942, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycerophosphocholine phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycerophospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycerophosphocholine phosphodiesterase GPCPD1
    Names
    glycerophosphocholine phosphodiesterase GDE1 homolog
    glycerophosphocholine phosphodiesterase GDE1-like protein
    NP_001385177.1
    XP_015139406.1
    XP_040552969.1
    XP_046769638.1
    XP_046769639.1
    XP_046769640.1
    XP_046769641.1
    XP_046769642.1
    XP_046769643.1
    XP_046769644.1
    XP_046769645.1
    XP_046769646.1
    XP_046769647.1
    XP_046769648.1
    XP_046794710.1
    XP_046794711.1
    XP_046794713.1
    XP_046794714.1
    XP_046794715.1
    XP_046794716.1
    XP_046794717.1
    XP_046794718.1
    XP_419376.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398248.1 → NP_001385177.1  glycerophosphocholine phosphodiesterase GPCPD1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000062
      UniProtKB/TrEMBL
      E1BYP8
      Related
      ENSGALP00010024493.1, ENSGALT00010041877.1
      Conserved Domains (2) summary
      cd05814
      Location:4 → 123
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:320 → 612
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      16449733..16491789 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_419376.8 → XP_419376.3  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      See identical proteins and their annotated locations for XP_419376.3

      UniProtKB/TrEMBL
      E1BYP8, S5ZB27
      Related
      ENSGALP00010024504.1, ENSGALT00010041892.1
      Conserved Domains (2) summary
      cd05814
      Location:4 → 123
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:320 → 612
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

    2. XM_040697035.2 → XP_040552969.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8, S5ZB27
      Conserved Domains (2) summary
      cd05814
      Location:4 → 123
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:320 → 612
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

    3. XM_046938757.1 → XP_046794713.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    4. XM_046938754.1 → XP_046794710.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    5. XM_046938758.1 → XP_046794714.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    6. XM_015283920.4 → XP_015139406.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8, S5ZB27
      Conserved Domains (2) summary
      cd05814
      Location:4 → 123
      CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
      cd08607
      Location:320 → 612
      GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

    7. XM_046938755.1 → XP_046794711.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    8. XM_046938759.1 → XP_046794715.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    9. XM_046938762.1 → XP_046794718.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X3

    10. XM_046938761.1 → XP_046794717.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X3

    11. XM_046938760.1 → XP_046794716.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z0R2
      Related
      ENSGALP00010024498.1, ENSGALT00010041884.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      16364364..16406493 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046913682.1 → XP_046769638.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    2. XM_046913684.1 → XP_046769640.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    3. XM_046913687.1 → XP_046769643.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    4. XM_046913685.1 → XP_046769641.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    5. XM_046913688.1 → XP_046769644.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    6. XM_046913683.1 → XP_046769639.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    7. XM_046913686.1 → XP_046769642.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    8. XM_046913689.1 → XP_046769645.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

      UniProtKB/TrEMBL
      E1BYP8

    9. XM_046913692.1 → XP_046769648.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X3

    10. XM_046913691.1 → XP_046769647.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X3

    11. XM_046913690.1 → XP_046769646.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X2

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001318987.1: Suppressed sequence

      Description
      NM_001318987.1: This RefSeq was removed because currently there is insufficient support for the transcript.
    Nucleotide Protein Strain
    Heading Accession and Version

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