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    TRPC1 transient receptor potential cation channel subfamily C member 1 [ Gallus gallus (chicken) ]

    Gene ID: 424776, updated on 17-Aug-2024

    Summary

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    Symbol
    TRPC1provided by CGNC
    Full Name
    transient receptor potential cation channel subfamily C member 1provided by CGNC
    Primary source
    CGNC:1899
    See related
    Ensembl:ENSGALG00010015788
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TRPC1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (10199920..10222227)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (10001230..10023559)

    Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene ATR serine/threonine kinase Neighboring gene plastin 1 Neighboring gene procollagen C-endopeptidase enhancer 2 Neighboring gene caskin-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables inositol 1,4,5 trisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables store-operated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in manganese ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cytosolic calcium ion concentration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cation channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short transient receptor potential channel 1
    Names
    store-operated calcium channel

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004409.3 → NP_001004409.1  short transient receptor potential channel 1

      See identical proteins and their annotated locations for NP_001004409.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000240
      UniProtKB/TrEMBL
      F1NH57, Q6DMS2
      Related
      ENSGALP00010021927.1, ENSGALT00010038005.1
      Conserved Domains (4) summary
      cd00204
      Location:39 → 167
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      TIGR00870
      Location:36 → 762
      trp; transient-receptor-potential calcium channel protein
      pfam08344
      Location:181 → 239
      TRP_2; Transient receptor ion channel II
      sd00045
      Location:71 → 98
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      10199920..10222227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040705527.2 → XP_040561461.1  short transient receptor potential channel 1 isoform X1

      Conserved Domains (2) summary
      TIGR00870
      Location:36 → 761
      trp; transient-receptor-potential calcium channel protein
      sd00045
      Location:71 → 98
      ANK; ANK repeat [structural motif]

    2. XM_040705528.2 → XP_040561462.1  short transient receptor potential channel 1 isoform X2

      Conserved Domains (1) summary
      TIGR00870
      Location:4 → 719
      trp; transient-receptor-potential calcium channel protein

    3. XM_046898373.1 → XP_046754329.1  short transient receptor potential channel 1 isoform X3

    RNA

    1. XR_001463738.4 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      10001230..10023559
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046923765.1 → XP_046779721.1  short transient receptor potential channel 1 isoform X1

    2. XM_046923766.1 → XP_046779722.1  short transient receptor potential channel 1 isoform X2

    3. XM_046923767.1 → XP_046779723.1  short transient receptor potential channel 1 isoform X3

    RNA

    1. XR_006935517.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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