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    FAM19A1 family with sequence similarity 19 member A1, C-C motif chemokine like [ Gallus gallus (chicken) ]

    Gene ID: 416089, updated on 3-Dec-2024

    Summary

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    Symbol
    FAM19A1provided by CGNC
    Full Name
    family with sequence similarity 19 member A1, C-C motif chemokine likeprovided by CGNC
    Primary source
    CGNC:66248
    See related
    Ensembl:ENSGALG00010019871
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See FAM19A1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (15121646..15318847)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (15155261..15352563)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene succinate-CoA ligase GDP-forming beta subunit Neighboring gene uncharacterized LOC121106610 Neighboring gene family with sequence similarity 19 member A4, C-C motif chemokine like Neighboring gene EGF domain specific O-linked N-acetylglucosamine transferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables receptor ligand activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of microglial cell activation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuroblast differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of microglial cell activation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of neuroblast proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chemokine-like protein TAFA-1
    Names
    family with sequence similarity 19 (chemokine (C-C motif)-like), member A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      15121646..15318847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001234078.7 → XP_001234079.3  chemokine-like protein TAFA-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z538, A0A8V0ZIC1
      Related
      ENSGALP00010028341.1, ENSGALT00010048011.1

    2. XM_004944676.5 → XP_004944733.3  chemokine-like protein TAFA-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z538, A0A8V0ZCD7
      Related
      ENSGALP00010028348.1, ENSGALT00010048023.1
      Conserved Domains (1) summary
      pfam12020
      Location:41 → 129
      TAFA; TAFA family

    3. XM_046900241.1 → XP_046756197.1  chemokine-like protein TAFA-1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z523, A0A8V0Z538
      Related
      ENSGALP00010028335.1, ENSGALT00010048003.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      15155261..15352563
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040682261.2 → XP_040538195.1  chemokine-like protein TAFA-1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z538
      Conserved Domains (1) summary
      pfam12020
      Location:53 → 141
      TAFA; TAFA family

    2. XM_040682262.2 → XP_040538196.1  chemokine-like protein TAFA-1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z538
      Conserved Domains (1) summary
      pfam12020
      Location:41 → 129
      TAFA; TAFA family

    3. XM_046926508.1 → XP_046782464.1  chemokine-like protein TAFA-1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z538

    4. XM_040682263.1 → XP_040538197.1  chemokine-like protein TAFA-1 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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