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    VSNL1 visinin like 1 [ Gallus gallus (chicken) ]

    Gene ID: 396189, updated on 3-Dec-2024

    Summary

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    Official Symbol
    VSNL1provided by CGNC
    Official Full Name
    visinin like 1provided by CGNC
    Primary source
    CGNC:12327
    See related
    Ensembl:ENSGALG00010002364
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See VSNL1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (99825981..99902932)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (99651820..99728735)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121113183 Neighboring gene RAD51 associated protein 2 Neighboring gene structural maintenance of chromosomes 6 Neighboring gene GEN1, Holliday junction 5' flap endonuclease

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VILIP, a cognate protein of the retinal calcium binding proteins visinin and recoverin, is expressed in the developing chicken brain. Lenz SE, et al. Brain Res Mol Brain Res, 1992 Sep. PMID 1359372
    2. NeuroD induces the expression of visinin and calretinin by proliferating cells derived from toxin-damaged chicken retina. Fischer AJ, et al. Dev Dyn, 2004 Mar. PMID 14991711
    3. The neuronal EF-hand Ca(2+)-binding protein VILIP: interaction with cell membrane and actin-based cytoskeleton. Lenz SE, et al. Biochem Biophys Res Commun, 1996 Aug 23. PMID 8780737
    4. Conserved BK channel-protein interactions reveal signals relevant to cell death and survival. Sokolowski B, et al. PLoS One, 2011. PMID 22174833, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. visinin and calretinin are induced by NeuroD in developing retinal cells
      Title: NeuroD induces the expression of visinin and calretinin by proliferating cells derived from toxin-damaged chicken retina.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    visinin-like protein 1
    Names
    OZ1
    VILIP

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205255.2 → NP_990586.1  visinin-like protein 1

      See identical proteins and their annotated locations for NP_990586.1

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000067
      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Related
      ENSGALP00010003212.1, ENSGALT00010005373.1
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      99825981..99902932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025148557.3 → XP_025004325.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    2. XM_046938526.1 → XP_046794482.1  visinin-like protein 1 isoform X4

    3. XM_015284953.4 → XP_015140439.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    4. XM_025148558.3 → XP_025004326.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    5. XM_025148560.3 → XP_025004328.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    6. XM_015284955.4 → XP_015140441.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    7. XM_046938524.1 → XP_046794480.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    8. XM_015284954.3 → XP_015140440.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    9. XM_046938525.1 → XP_046794481.1  visinin-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0X5A5, A0A8V0XC97
      Related
      ENSGALP00010003211.1, ENSGALT00010005372.1

    10. XM_015284952.4 → XP_015140438.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Related
      ENSGALP00010003209.1, ENSGALT00010005370.1
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    11. XM_046938523.1 → XP_046794479.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    12. XM_046938521.1 → XP_046794477.1  visinin-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XC97

    13. XM_015284956.4 → XP_015140442.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
      Conserved Domains (1) summary
      COG5126
      Location:15 → 181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    14. XM_046938522.1 → XP_046794478.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      99651820..99728735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046913215.1 → XP_046769171.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    2. XM_046913222.1 → XP_046769178.1  visinin-like protein 1 isoform X4

    3. XM_046913211.1 → XP_046769167.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    4. XM_046913214.1 → XP_046769170.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    5. XM_046913216.1 → XP_046769172.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    6. XM_046913212.1 → XP_046769168.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    7. XM_046913220.1 → XP_046769176.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    8. XM_046913218.1 → XP_046769174.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    9. XM_046913221.1 → XP_046769177.1  visinin-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0X5A5, A0A8V0XC97

    10. XM_046913223.1 → XP_046769179.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    11. XM_046913219.1 → XP_046769175.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    12. XM_046913210.1 → XP_046769166.1  visinin-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XC97

    13. XM_046913213.1 → XP_046769169.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97

    14. XM_046913217.1 → XP_046769173.1  visinin-like protein 1 isoform X2

      UniProtKB/Swiss-Prot
      P62764
      UniProtKB/TrEMBL
      A0A8V0XC97
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P62764.2 GenPept UniProtKB/Swiss-Prot:P62764

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