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    THAPSDRAFT_264276 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7444298, updated on 21-Dec-2023

    Summary

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    Gene symbol
    THAPSDRAFT_264276
    Gene description
    hypothetical protein
    Locus tag
    THAPSDRAFT_264276
    Gene type
    protein coding
    RNA name
    hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    See THAPSDRAFT_264276 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Sequence:
    Chromosome: 15; NC_012078.1 (180189..182803, complement)

    Chromosome 15 - NC_012078.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012078.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endosomal vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HOPS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein
    XP_002294191.1
    • This protein of unknown function contains a 7-Fold repeatfound in clathrin and VPS proteins.Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Also, a homologous protein of unknown function in Mus musculus (Mouse) is inferred tocontain a z inc finger, C3HC4 type (RING finger). This type of RING-finger is a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc,and is probably involved in mediating protein-protein interactions.homologous to Homo Sapien hypotheticalal protein ACCESSION CAD38698; hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012078.1 Reference assembly

      Range
      180189..182803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002294155.2 → XP_002294191.1  hypothetical protein THAPSDRAFT_264276 [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002294191.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B8CD47
      Conserved Domains (1) summary
      pfam12816
      Location:68 → 263
      Vps8; Golgi CORVET complex core vacuolar protein 8
    Nucleotide Protein
    Heading Accession and Version

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