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    LOC8261470 primary amine oxidase 1 [ Ricinus communis (castor bean) ]

    Gene ID: 8261470, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC8261470
    Gene description
    primary amine oxidase 1
    Locus tag
    RCOM_0678050
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8261470 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 9 NC_063264.1 (2585072..2587919)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994316.1 (106412..109249, complement)

    Chromosome 9 - NC_063264.1Genomic Context describing neighboring genes Neighboring gene organelle RRM domain-containing protein 2, mitochondrial-like Neighboring gene heat shock 70 kDa protein 8 Neighboring gene primary amine oxidase Neighboring gene uncharacterized LOC125371104 Neighboring gene primary amine oxidase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables primary methylamine oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables quinone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    primary amine oxidase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063264.1 Reference ASM1957865v1

      Range
      2585072..2587919
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002516735.4 → XP_002516781.1  primary amine oxidase 1 isoform X1

      See identical proteins and their annotated locations for XP_002516781.1

      UniProtKB/TrEMBL
      B9RSR2
      Conserved Domains (4) summary
      PLN02566
      Location:1 → 646
      PLN02566; amine oxidase (copper-containing)
      pfam01179
      Location:239 → 645
      Cu_amine_oxid; Copper amine oxidase, enzyme domain
      pfam02727
      Location:22 → 107
      Cu_amine_oxidN2; Copper amine oxidase, N2 domain
      pfam02728
      Location:117 → 214
      Cu_amine_oxidN3; Copper amine oxidase, N3 domain

    2. XM_015717893.2 → XP_015573379.1  primary amine oxidase 1 isoform X2

      Conserved Domains (4) summary
      PLN02566
      Location:1 → 595
      PLN02566; amine oxidase (copper-containing)
      pfam01179
      Location:239 → 595
      Cu_amine_oxid; Copper amine oxidase, enzyme domain
      pfam02727
      Location:22 → 107
      Cu_amine_oxidN2; Copper amine oxidase, N2 domain
      pfam02728
      Location:117 → 214
      Cu_amine_oxidN3; Copper amine oxidase, N3 domain
    Nucleotide Protein
    Heading Accession and Version

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