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    THAPS_35643 protein kinase [ Thalassiosira pseudonana CCMP1335 ]

    Gene ID: 7448965, updated on 21-Dec-2023

    Summary

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    Gene symbol
    THAPS_35643
    Gene description
    protein kinase
    Locus tag
    THAPS_35643
    Gene type
    protein coding
    RNA name
    protein kinase
    RefSeq status
    PROVISIONAL
    Organism
    Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
    Lineage
    Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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    Genomic context

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    See THAPS_35643 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Sequence:
    Chromosome: 7; NC_012070.1 (466619..467729)

    Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene acetyl-coa carboxylase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012070.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
    2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    protein kinase
    XP_002295735.1
    • Contains conserved ser/thr protein kinase domain (IPR002290) and tyr kinase domain (IPR001245). Aligns with renal tumor antigen in H. sapiens (49% identity over 290 amino acids), a novel member of the MAP kinase family.

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012070.1 Reference assembly

      Range
      466619..467729
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002295699.1 → XP_002295735.1  protein kinase, partial [Thalassiosira pseudonana CCMP1335]

      See identical proteins and their annotated locations for XP_002295735.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B5YMF7
      Conserved Domains (2) summary
      smart00220
      Location:4 → 289
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd07831
      Location:4 → 289
      STKc_MOK; Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase
    Nucleotide Protein
    Heading Accession and Version

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