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    LOC100263860 IAA-amino acid hydrolase ILR1-like 1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100263860, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100263860
    Gene description
    IAA-amino acid hydrolase ILR1-like 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100263860 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (10011326..10016175, complement)
    102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (9674672..9679476, complement)

    Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109123557 Neighboring gene xyloglucan O-acetyltransferase 1 Neighboring gene IAA-amino acid hydrolase ILR1-like 4 Neighboring gene peroxidase 41

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables IAA-Ala conjugate hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in auxin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IAA-amino acid hydrolase ILR1-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

      Range
      10011326..10016175 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002266942.4 → XP_002266978.1  IAA-amino acid hydrolase ILR1-like 1

      Conserved Domains (2) summary
      cd08017
      Location:58 → 434
      M20_IAA_Hyd; M20 Peptidase Indole-3-acetic acid amino acid hydrolase
      COG1473
      Location:56 → 433
      AbgB; Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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