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    LOC100253526 protein EARLY FLOWERING 4 [ Vitis vinifera (wine grape) ]

    Gene ID: 100253526, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100253526
    Gene description
    protein EARLY FLOWERING 4
    Locus tag
    VIT_00032821001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100253526 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (501072..502055)
    102 previous assembly 12X (GCF_000003745.3) 13 NC_012019.3 (494014..494953)

    Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein At1g50180 Neighboring gene DNA replication complex GINS protein PSF3 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP20-1 Neighboring gene phosphoinositide phospholipase C 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in entrainment of circadian clock IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein EARLY FLOWERING 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

      Range
      501072..502055
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002270697.4 → XP_002270733.1  protein EARLY FLOWERING 4

      See identical proteins and their annotated locations for XP_002270733.1

      UniProtKB/TrEMBL
      A0A438J2D1, D7T4P8
      Conserved Domains (1) summary
      pfam07011
      Location:46 → 128
      DUF1313; Protein of unknown function (DUF1313)
    Nucleotide Protein
    Heading Accession and Version

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