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    LOC100256314 CST complex subunit TEN1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100256314, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100256314
    Gene description
    CST complex subunit TEN1
    Locus tag
    VIT_00031156001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100256314 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 14 NC_081818.1 (1708427..1712750)
    102 previous assembly 12X (GCF_000003745.3) 14 NC_012020.3 (1645365..1649690)

    Chromosome 14 - NC_081818.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL22z Neighboring gene uncharacterized LOC100240883 Neighboring gene probable protein phosphatase 2C 34 Neighboring gene 3-ketoacyl-CoA synthase 7-like Neighboring gene acetylajmalan esterase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomerase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of telomere maintenance via telomerase IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CST complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CST complex subunit TEN1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081818.1 Reference ASM3070453v1 Primary Assembly

      Range
      1708427..1712750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010661342.3 → XP_010659644.1  CST complex subunit TEN1

      See identical proteins and their annotated locations for XP_010659644.1

      Conserved Domains (1) summary
      pfam15490
      Location:7 → 119
      Ten1_2; Telomere-capping, CST complex subunit

    2. XM_002283531.4 → XP_002283567.1  CST complex subunit TEN1

      See identical proteins and their annotated locations for XP_002283567.1

      Conserved Domains (1) summary
      pfam15490
      Location:7 → 119
      Ten1_2; Telomere-capping, CST complex subunit

    3. XM_003633556.4 → XP_003633604.1  CST complex subunit TEN1

      See identical proteins and their annotated locations for XP_003633604.1

      Conserved Domains (1) summary
      pfam15490
      Location:7 → 119
      Ten1_2; Telomere-capping, CST complex subunit
    Nucleotide Protein
    Heading Accession and Version

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