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    CTRG_06152 hypothetical protein [ Candida tropicalis MYA-3404 ]

    Gene ID: 8300013, updated on 17-May-2024

    Summary

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    Gene symbol
    CTRG_06152
    Gene description
    hypothetical protein
    Locus tag
    CTRG_06152
    See related
    FungiDB:CTRG_06152; VEuPathDB:CTRG_06152
    Gene type
    protein coding
    RNA name
    conserved hypothetical protein
    RefSeq status
    PROVISIONAL
    Organism
    Candida tropicalis MYA-3404 (strain: MYA-3404)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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    Genomic context

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    See CTRG_06152 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_003020040.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene dihydroceramide delta(4)-desaturase Neighboring gene histidyl-tRNA synthetase, mitochondrial precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003020040.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Butler G, et al. Nature, 2009 Jun 4. PMID 19465905, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomerase RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of telomerase holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hypothetical protein
    XP_002546674.1
    • Candida DB at Institut Pasteur CTRG_06152

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003020040.1 Reference assembly

      Range
      412950..414692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002546628.1 → XP_002546674.1  conserved hypothetical protein [Candida tropicalis MYA-3404]

      See identical proteins and their annotated locations for XP_002546674.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C5MJA9
      Conserved Domains (2) summary
      pfam10373
      Location:226 → 473
      EST1_DNA_bind; Est1 DNA/RNA binding domain
      pfam10374
      Location:59 → 194
      EST1; Telomerase activating protein Est1
    Protein Accession Links
    GenPept Link UniProtKB Link
    EER30368.1

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