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    LOC8084035 leucine--tRNA ligase, cytoplasmic [ Sorghum bicolor (sorghum) ]

    Gene ID: 8084035, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8084035
    Gene description
    leucine--tRNA ligase, cytoplasmic
    Locus tag
    SORBI_3001G407700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8084035 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (69183520..69188983)

    Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110429663 Neighboring gene uncharacterized LOC110437413 Neighboring gene omega-3 fatty acid desaturase, chloroplastic Neighboring gene probable 2-oxoglutarate-dependent dioxygenase At5g05600 Neighboring gene rhodanese-like domain-containing protein 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • PZA00446_Zea_mays_ssp._parviglumis_Beadle_&_Kato_site_4 (e-PCR)

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables aminoacyl-tRNA editing activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables leucine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in leucyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine--tRNA ligase, cytoplasmic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      69183520..69188983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021462797.1 → XP_021318472.1  leucine--tRNA ligase, cytoplasmic isoform X2

      UniProtKB/TrEMBL
      A0A921V0J3, C5WNJ7
      Conserved Domains (1) summary
      PLN02959
      Location:3 → 1086
      PLN02959; aminoacyl-tRNA ligase

    2. XM_021462790.1 → XP_021318465.1  leucine--tRNA ligase, cytoplasmic isoform X1

      Conserved Domains (1) summary
      PLN02959
      Location:34 → 1117
      PLN02959; aminoacyl-tRNA ligase

    3. XM_002465375.2 → XP_002465420.1  leucine--tRNA ligase, cytoplasmic isoform X2

      See identical proteins and their annotated locations for XP_002465420.1

      UniProtKB/TrEMBL
      A0A921V0J3, C5WNJ7
      Conserved Domains (1) summary
      PLN02959
      Location:3 → 1086
      PLN02959; aminoacyl-tRNA ligase

    4. XM_021462802.1 → XP_021318477.1  leucine--tRNA ligase, cytoplasmic isoform X2

      UniProtKB/TrEMBL
      A0A921V0J3, C5WNJ7
      Conserved Domains (1) summary
      PLN02959
      Location:3 → 1086
      PLN02959; aminoacyl-tRNA ligase

    5. XM_021462806.1 → XP_021318481.1  leucine--tRNA ligase, cytoplasmic isoform X2

      UniProtKB/TrEMBL
      A0A921V0J3, C5WNJ7
      Conserved Domains (1) summary
      PLN02959
      Location:3 → 1086
      PLN02959; aminoacyl-tRNA ligase
    Nucleotide Protein
    Heading Accession and Version

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