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    LOC8080541 RNA-binding protein 39 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8080541, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8080541
    Gene description
    RNA-binding protein 39
    Locus tag
    SORBI_3001G500300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8080541 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (76965702..76972713)

    Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene FAD-dependent urate hydroxylase Neighboring gene cinnamoyl-CoA reductase 2 Neighboring gene FAD-dependent urate hydroxylase Neighboring gene kinesin-like protein KIN-UA Neighboring gene uncharacterized LOC8080542

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • PZA00428_Zea_mays_ssp._parviglumis_Beadle_&_Kato_site_4 (e-PCR)

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 39

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      76965702..76972713
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002465793.2 → XP_002465838.1  RNA-binding protein 39

      See identical proteins and their annotated locations for XP_002465838.1

      UniProtKB/TrEMBL
      A0A921S7C8, C5WXU5
      Conserved Domains (1) summary
      TIGR01622
      Location:27 → 540
      SF-CC1; splicing factor, CC1-like family
    Nucleotide Protein
    Heading Accession and Version

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