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    LOC8071307 40S ribosomal protein S16 [ Sorghum bicolor (sorghum) ]

    Gene ID: 8071307, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC8071307
    Gene description
    40S ribosomal protein S16
    Locus tag
    SORBI_3008G021100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sorghum bicolor
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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    Genomic context

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    See LOC8071307 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 8 NC_012877.2 (1830826..1831622)

    Chromosome 8 - NC_012877.2Genomic Context describing neighboring genes Neighboring gene disease resistance protein RPM1 Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene V-type proton ATPase subunit C Neighboring gene uncharacterized LOC8071450

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012877.2 Chromosome 8 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Genomic

    1. NC_012877.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

      Range
      1830826..1831622
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002441709.2 → XP_002441754.1  40S ribosomal protein S16

      See identical proteins and their annotated locations for XP_002441754.1

      UniProtKB/TrEMBL
      A0A921QGC0, C5YR16
      Conserved Domains (1) summary
      PLN00210
      Location:9 → 149
      PLN00210; 40S ribosomal protein S16; Provisional
    Nucleotide Protein
    Heading Accession and Version

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