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    PHYKPL 5-phosphohydroxy-L-lysine phospho-lyase [ Desmodus rotundus (common vampire bat) ]

    Gene ID: 112320332, updated on 30-Mar-2024

    Summary

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    Gene symbol
    PHYKPL
    Gene description
    5-phosphohydroxy-L-lysine phospho-lyase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Desmodus rotundus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Desmodontinae; Desmodus
    Orthologs
    human mouse all
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    Genomic context

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    See PHYKPL in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_02 current HLdesRot8A (GCF_022682495.1) 10 NC_071396.1 (42150585..42178639, complement)
    101 previous assembly ASM294091v2 (GCF_002940915.1) Unplaced Scaffold NW_020093688.1 (466361..490867)

    Chromosome 10 - NC_071396.1Genomic Context describing neighboring genes Neighboring gene required for meiotic nuclear division 5 homolog B Neighboring gene heterogeneous nuclear ribonucleoprotein A/B Neighboring gene NHP2 ribonucleoprotein Neighboring gene U6 spliceosomal RNA Neighboring gene collagen type XXIII alpha 1 chain Neighboring gene CDC like kinase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5-phosphohydroxy-L-lysine phospho-lyase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022682495.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HLdesRot8A Primary Assembly

    Genomic

    1. NC_071396.1 Reference HLdesRot8A Primary Assembly

      Range
      42150585..42178639 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053913074.1 → XP_053769049.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X4

    2. XM_053913075.1 → XP_053769050.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X5

    3. XM_053913076.1 → XP_053769051.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X6

    4. XM_053913072.1 → XP_053769047.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X2

    5. XM_024577800.3 → XP_024433568.3  5-phosphohydroxy-L-lysine phospho-lyase isoform X7

    6. XM_053913071.1 → XP_053769046.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X1

    7. XM_053913073.1 → XP_053769048.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X3

    8. XM_053913077.1 → XP_053769052.1  5-phosphohydroxy-L-lysine phospho-lyase isoform X8

    Nucleotide Protein
    Heading Accession and Version

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