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    CG13841 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 50061, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG13841provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0040588
    Locus tag
    Dmel_CG13841
    See related
    AllianceGenome:FB:FBgn0040588
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13841
    Summary
    Predicted to be a structural constituent of chitin-based larval cuticle. Predicted to be active in chitin-based extracellular matrix. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG13841 in Genome Data Viewer
    Location:
    94C4-94C4; 3-76 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (22766732..22767699, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (18592454..18593421, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Ubiquitin-specific protease 12/46 Neighboring gene uncharacterized protein Neighboring gene Neprilysin-like 14 Neighboring gene Neprilysin-like 15 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Drosophila Tis11 protein and its effects on mRNA expression in flies. Choi YJ, et al. J Biol Chem, 2014 Dec 19. PMID 25342740, Free PMC Article
    2. Flying toward a plastic-free world: Can Drosophila serve as a model organism to develop new strategies of plastic waste management? Pignataro E, et al. Sci Total Environ, 2024 Mar 1. PMID 38199375
    3. GlycoFly: a database of Drosophila N-linked glycoproteins identified using SPEG--MS techniques. Baycin-Hizal D, et al. J Proteome Res, 2011 Jun 3. PMID 21480662
    4. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
    5. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables structural constituent of chitin-based larval cuticle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in chitin-based extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13841-PA
    CG13841-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      22766732..22767699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_143984.3 → NP_652241.1  uncharacterized protein Dmel_CG13841, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_652241.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VCU0
      Related
      FBpp0083709
      Conserved Domains (1) summary
      pfam13965
      Location:1 → 79
      SID-1_RNA_chan; dsRNA-gated channel SID-1

    2. NM_001316554.1 → NP_001303483.1  uncharacterized protein Dmel_CG13841, isoform B [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VCU0
      Conserved Domains (1) summary
      pfam13965
      Location:1 → 79
      SID-1_RNA_chan; dsRNA-gated channel SID-1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VCU0 Q9VCU0

    Gene LinkOut

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