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    SAMD8 sterile alpha motif domain containing 8 [ Gorilla gorilla gorilla (western lowland gorilla) ]

    Gene ID: 101147525, updated on 3-Dec-2024

    Summary

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    Gene symbol
    SAMD8
    Gene description
    sterile alpha motif domain containing 8
    See related
    Ensembl:ENSGGOG00000011029
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gorilla gorilla gorilla (sub-species: gorilla)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Gorilla
    Orthologs
    human mouse all
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    Genomic context

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    See SAMD8 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mGorGor1-v2.0_pri (GCF_029281585.2) 8 NC_073232.2 (40568156..40651203, complement)
    RS_2023_04 previous assembly NHGRI_mGorGor1-v1.1-0.2.freeze_pri (GCF_029281585.1) 10 NC_073234.1 (40696045..40778325, complement)

    Chromosome 8 - NC_073232.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101149896 Neighboring gene catechol-O-methyltransferase domain containing 1 Neighboring gene voltage dependent anion channel 2 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene dual specificity phosphatase 13A Neighboring gene dual specificity phosphatase 13B Neighboring gene dual specificity phosphatase 29

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ceramide cholinephosphotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sphingomyelin synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ceramide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sphingomyelin synthase-related protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029281585.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

    Genomic

    1. NC_073232.2 Reference NHGRI_mGorGor1-v2.0_pri Primary Assembly

      Range
      40568156..40651203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019035452.3 → XP_018890997.1  sphingomyelin synthase-related protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A2I2YQC2, G3R613
      Related
      ENSGGOP00000032507.1
      Conserved Domains (2) summary
      cd09515
      Location:9 → 77
      SAM_SGMS1-like; SAM domain of sphingomyelin synthase related subfamily
      pfam14360
      Location:292 → 365
      PAP2_C; PAP2 superfamily C-terminal

    2. XM_019035454.4 → XP_018890999.3  sphingomyelin synthase-related protein 1 isoform X1

      UniProtKB/TrEMBL
      G3R613

    3. XM_019035453.3 → XP_018890998.1  sphingomyelin synthase-related protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A2I2YQC2, G3R613
      Related
      ENSGGOP00000036925.1
      Conserved Domains (2) summary
      cd09515
      Location:9 → 77
      SAM_SGMS1-like; SAM domain of sphingomyelin synthase related subfamily
      pfam14360
      Location:292 → 365
      PAP2_C; PAP2 superfamily C-terminal

    4. XM_055353375.2 → XP_055209350.1  sphingomyelin synthase-related protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A2I2YQC2, G3R613

    5. XM_055353374.2 → XP_055209349.1  sphingomyelin synthase-related protein 1 isoform X2

      UniProtKB/TrEMBL
      G3R613
    Nucleotide Protein
    Heading Accession and Version

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