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    MICPUN_102173 hypothetical protein [ Micromonas commoda ]

    Gene ID: 8246054, updated on 16-Nov-2023

    Summary

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    Gene symbol
    MICPUN_102173
    Gene description
    hypothetical protein
    Locus tag
    MICPUN_102173
    Gene type
    protein coding
    RNA name
    predicted protein
    RefSeq status
    PROVISIONAL
    Organism
    Micromonas commoda (strain: RCC299)
    Lineage
    Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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    Genomic context

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    See MICPUN_102173 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Sequence:
    Chromosome: 9; NC_013046.1 (246037..248971, complement)

    Chromosome 9 - NC_013046.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013046.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Worden AZ, et al. Science, 2009 Apr 10. PMID 19359590
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    hypothetical protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013046.1 Reference assembly

      Range
      246037..248971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002504450.1 → XP_002504496.1  predicted protein [Micromonas commoda]

      See identical proteins and their annotated locations for XP_002504496.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      C1EBN8
      Conserved Domains (5) summary
      COG2319
      Location:13 → 319
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:11 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08324
      Location:545 → 791
      PUL; PUL domain
      pfam09070
      Location:365 → 475
      PFU; PFU (PLAA family ubiquitin binding)
      sd00039
      Location:18 → 57
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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