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    LOC8289023 polyamine oxidase 1 [ Ricinus communis (castor bean) ]

    Gene ID: 8289023, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC8289023
    Gene description
    polyamine oxidase 1
    Locus tag
    RCOM_1510850
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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    Genomic context

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    See LOC8289023 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 4 NC_063259.1 (26515630..26518656)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994278.1 (3688012..3691026, complement)

    Chromosome 4 - NC_063259.1Genomic Context describing neighboring genes Neighboring gene transcription factor bHLH162 Neighboring gene polygalacturonase 1 beta-like protein 1 Neighboring gene transcription factor MYB1 Neighboring gene uncharacterized LOC8289019

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyamine oxidase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063259.1 Reference ASM1957865v1

      Range
      26515630..26518656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002511370.4 → XP_002511416.1  polyamine oxidase 1

      See identical proteins and their annotated locations for XP_002511416.1

      UniProtKB/TrEMBL
      B9RB41
      Conserved Domains (2) summary
      PLN02676
      Location:1 → 483
      PLN02676; polyamine oxidase
      pfam13450
      Location:31 → 100
      NAD_binding_8; NAD(P)-binding Rossmann-like domain
    Nucleotide Protein
    Heading Accession and Version

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