U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC8275668 leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1 [ Ricinus communis (castor bean) ]

    Gene ID: 8275668, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC8275668
    Gene description
    leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1
    Locus tag
    RCOM_0800450
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ricinus communis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC8275668 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current ASM1957865v1 (GCF_019578655.1) 3 NC_063258.1 (30678851..30683190, complement)
    101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994311.1 (601462..605766, complement)

    Chromosome 3 - NC_063258.1Genomic Context describing neighboring genes Neighboring gene thioredoxin-related transmembrane protein 2 Neighboring gene homeobox-leucine zipper protein ATHB-8 Neighboring gene SART-1 family protein DOT2 Neighboring gene uncharacterized LOC8275670

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1
    Names
    probably inactive leucine-rich repeat receptor-like protein kinase At2g25790

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1957865v1

    Genomic

    1. NC_063258.1 Reference ASM1957865v1

      Range
      30678851..30683190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002516469.3 → XP_002516515.1  leucine-rich repeat receptor-like serine/threonine-protein kinase SKM1

      UniProtKB/TrEMBL
      B9RRZ6
      Conserved Domains (5) summary
      PLN00113
      Location:1 → 972
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      cd00116
      Location:90 → 400
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:96 → 120
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:28 → 67
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:699 → 953
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials