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    LOC100259266 zinc finger CCCH domain-containing protein 64 [ Vitis vinifera (wine grape) ]

    Gene ID: 100259266, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC100259266
    Gene description
    zinc finger CCCH domain-containing protein 64
    Locus tag
    VIT_00015197001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100259266 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 11 NC_081815.1 (1732728..1754789)
    102 previous assembly 12X (GCF_000003745.3) 11 NC_012017.3 (1733857..1755989)

    Chromosome 11 - NC_081815.1Genomic Context describing neighboring genes Neighboring gene translation machinery-associated protein 22 Neighboring gene LOB domain-containing protein 9 Neighboring gene pathogen-associated molecular patterns-induced protein A70 Neighboring gene receptor-like serine/threonine-protein kinase ALE2 Neighboring gene dehydration-responsive element-binding protein 1F-like Neighboring gene uncharacterized LOC100242227

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA lariat debranching enzyme activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 64

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081815.1 Reference ASM3070453v1 Primary Assembly

      Range
      1732728..1754789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059740871.1 → XP_059596854.1  zinc finger CCCH domain-containing protein 64 isoform X1

      UniProtKB/TrEMBL
      D7TB71

    2. XM_059740873.1 → XP_059596856.1  zinc finger CCCH domain-containing protein 64 isoform X3

      UniProtKB/TrEMBL
      D7TB71

    3. XM_059740872.1 → XP_059596855.1  zinc finger CCCH domain-containing protein 64 isoform X2

      UniProtKB/TrEMBL
      D7TB71

    4. XM_059740874.1 → XP_059596857.1  zinc finger CCCH domain-containing protein 64 isoform X4

      UniProtKB/TrEMBL
      D7TB71

    5. XM_059740875.1 → XP_059596858.1  zinc finger CCCH domain-containing protein 64 isoform X5

      UniProtKB/TrEMBL
      D7TB71
    Nucleotide Protein
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