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    LOC132385333 B-cell CLL/lymphoma 9-like protein [ Hypanus sabinus (Atlantic stingray) ]

    Gene ID: 132385333, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC132385333
    Gene description
    B-cell CLL/lymphoma 9-like protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hypanus sabinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Myliobatiformes; Dasyatidae; Hypanus
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    Genomic context

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    See LOC132385333 in Genome Data Viewer
    Location:
    chromosome: Y
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current sHypSab1.hap1 (GCF_030144855.1) Y NC_082740.1 (1296451..1563478, complement)

    Chromosome Y - NC_082740.1Genomic Context describing neighboring genes Neighboring gene importin subunit beta-1-like Neighboring gene puromycin-sensitive aminopeptidase-like Neighboring gene probable ATP-dependent RNA helicase ddx6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_082740.1 Chromosome Y Reference sHypSab1.hap1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-catenin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transforming growth factor beta receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of beta-catenin-TCF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B-cell CLL/lymphoma 9-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030144855.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference sHypSab1.hap1

    Genomic

    1. NC_082740.1 Reference sHypSab1.hap1

      Range
      1296451..1563478 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059957362.1 → XP_059813345.1  B-cell CLL/lymphoma 9-like protein isoform X5

    2. XM_059957363.1 → XP_059813346.1  B-cell CLL/lymphoma 9-like protein isoform X6

    3. XM_059957359.1 → XP_059813342.1  B-cell CLL/lymphoma 9-like protein isoform X2

    4. XM_059957360.1 → XP_059813343.1  B-cell CLL/lymphoma 9-like protein isoform X3

    5. XM_059957361.1 → XP_059813344.1  B-cell CLL/lymphoma 9-like protein isoform X4

    6. XM_059957358.1 → XP_059813341.1  B-cell CLL/lymphoma 9-like protein isoform X1

    7. XM_059957368.1 → XP_059813351.1  B-cell CLL/lymphoma 9-like protein isoform X8

    8. XM_059957366.1 → XP_059813349.1  B-cell CLL/lymphoma 9-like protein isoform X8

    9. XM_059957367.1 → XP_059813350.1  B-cell CLL/lymphoma 9-like protein isoform X8

    10. XM_059957365.1 → XP_059813348.1  B-cell CLL/lymphoma 9-like protein isoform X7

    11. XM_059957369.1 → XP_059813352.1  B-cell CLL/lymphoma 9-like protein isoform X9

    12. XM_059957370.1 → XP_059813353.1  B-cell CLL/lymphoma 9-like protein isoform X10

    RNA

    1. XR_009509157.1 RNA Sequence

    2. XR_009509158.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version