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    ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase [ Bos taurus (domestic cattle) ]

    Gene ID: 515340, updated on 28-Dec-2024

    Summary

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    Official Symbol
    ABOprovided by VGNC
    Official Full Name
    ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferaseprovided by VGNC
    Primary source
    VGNC:VGNC:25510
    See related
    BGD:BT20060; Ensembl:ENSBTAG00000012525
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ABO in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (104176830..104214825, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100848307 Neighboring gene uncharacterized LOC112448857 Neighboring gene U6 spliceosomal RNA Neighboring gene surfeit 6 Neighboring gene mediator complex subunit 22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histo-blood group ABO system transferase
    Names
    ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)
    NP_001071394.1
    XP_024854354.1
    XP_024854356.1
    XP_024854358.1
    XP_059747197.1
    XP_059747198.1
    XP_059747199.1
    XP_059747200.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077926.1 → NP_001071394.1  histo-blood group ABO system transferase

      See identical proteins and their annotated locations for NP_001071394.1

      Status: PROVISIONAL

      Source sequence(s)
      BC126634
      UniProtKB/TrEMBL
      A0A3Q1M8N6, A0JND7
      Related
      ENSBTAP00000073220.2, ENSBTAT00000073606.2
      Conserved Domains (1) summary
      pfam03414
      Location:74 → 361
      Glyco_transf_6; Glycosyltransferase family 6

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      104176830..104214825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059891216.1 → XP_059747199.1  histo-blood group ABO system transferase isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M8N6

    2. XM_059891214.1 → XP_059747197.1  histo-blood group ABO system transferase isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M8N6

    3. XM_059891217.1 → XP_059747200.1  histo-blood group ABO system transferase isoform X6

      UniProtKB/TrEMBL
      A0A3Q1M8N6
      Related
      ENSBTAP00000040384.5, ENSBTAT00000042758.5

    4. XM_024998590.2 → XP_024854358.1  histo-blood group ABO system transferase isoform X7

      UniProtKB/TrEMBL
      A0A3Q1M8N6
      Related
      ENSBTAP00000066822.2, ENSBTAT00000081124.2
      Conserved Domains (1) summary
      pfam03414
      Location:73 → 360
      Glyco_transf_6; Glycosyltransferase family 6

    5. XM_024998588.2 → XP_024854356.1  histo-blood group ABO system transferase isoform X5

      UniProtKB/TrEMBL
      A0AAA9TIZ1
      Conserved Domains (1) summary
      pfam03414
      Location:89 → 376
      Glyco_transf_6; Glycosyltransferase family 6

    6. XM_024998586.2 → XP_024854354.1  histo-blood group ABO system transferase isoform X4

      UniProtKB/TrEMBL
      A0AAA9TIZ1
      Related
      ENSBTAP00000097123.1, ENSBTAT00000095936.1
      Conserved Domains (1) summary
      pfam03414
      Location:90 → 377
      Glyco_transf_6; Glycosyltransferase family 6

    7. XM_059891215.1 → XP_059747198.1  histo-blood group ABO system transferase isoform X2

      UniProtKB/TrEMBL
      F1N6G4
    Nucleotide Protein Strain
    Heading Accession and Version

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