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    TCFL5 transcription factor like 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 513750, updated on 27-Dec-2024

    Summary

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    Gene symbol
    TCFL5
    Gene description
    transcription factor like 5
    See related
    BGD:BT28778; Ensembl:ENSBTAG00000046520
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TCFL5 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (54528023..54545393)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 9 Neighboring gene GID complex subunit 8 homolog Neighboring gene death inducer-obliterator 1 Neighboring gene collagen type IX alpha 3 chain Neighboring gene uncharacterized LOC132346929 Neighboring gene opioid growth factor receptor Neighboring gene MRG domain binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC137754

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor-like 5 protein
    Names
    transcription factor-like 5 (basic helix-loop-helix)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54528023..54545393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059892980.1 → XP_059748963.1  transcription factor-like 5 protein isoform X3

      UniProtKB/TrEMBL
      A8QQD7
      Related
      ENSBTAP00000056709.1, ENSBTAT00000069925.1

    2. XM_025001126.2 → XP_024856894.1  transcription factor-like 5 protein isoform X1

      UniProtKB/TrEMBL
      A0AAA9T061
      Related
      ENSBTAP00000089777.1, ENSBTAT00000121413.1

    3. XM_025001127.2 → XP_024856895.1  transcription factor-like 5 protein isoform X2

      UniProtKB/TrEMBL
      A0AAA9T061, G3MWS7
      Related
      ENSBTAP00000053981.3, ENSBTAT00000063242.3
    Nucleotide Protein Strain
    Heading Accession and Version

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