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    LOC118084239 collagen alpha-1(XXVII) chain [ Zootoca vivipara (common lizard) ]

    Gene ID: 118084239, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC118084239
    Gene description
    collagen alpha-1(XXVII) chain
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zootoca vivipara
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
    Also known as
    COL27A1
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    Genomic context

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    See LOC118084239 in Genome Data Viewer
    Location:
    chromosome: Z
    Exon count:
    61
    Annotation release Status Assembly Chr Location
    RS_2023_10 current rZooViv1.1 (GCF_963506605.1) Z NC_083294.1 (2818052..3085650)
    100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG4 NC_048608.1 (69250412..69533770)

    Chromosome Z - NC_083294.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 25 Neighboring gene nuclear apoptosis inducing factor 1 Neighboring gene DENN domain containing 1A Neighboring gene LIM/homeobox protein Lhx2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(XXVII) chain
    Names
    collagen type XXVII alpha 1 chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rZooViv1.1

    Genomic

    1. NC_083294.1 Reference rZooViv1.1

      Range
      2818052..3085650
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_060270658.1 → XP_060126641.1  collagen alpha-1(XXVII) chain isoform X1

    2. XM_060270659.1 → XP_060126642.1  collagen alpha-1(XXVII) chain isoform X2

    Nucleotide Protein
    Heading Accession and Version

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