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    Ccdc7a coiled-coil domain containing 7A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498971, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ccdc7aprovided by RGD
    Official Full Name
    coiled-coil domain containing 7Aprovided by RGD
    Primary source
    RGD:1565448
    See related
    EnsemblRapid:ENSRNOG00000069478 AllianceGenome:RGD:1565448
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rtap2
    Expression
    Restricted expression toward (RPKM 158.0) See more
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    Genomic context

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    See Ccdc7a in Genome Data Viewer
    Location:
    19q12
    Exon count:
    89
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (73660735..74071499, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (56763665..57174415, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134483666 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene integrin subunit beta 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene RNA, U4 small nuclear 86, pseudogene Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC134483667 Neighboring gene coiled-coil domain containing 7B Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Characterization of a novel rat gene RTAP2a, screened by cross-reactive SEREX, restrictedly expressed in testis. Yang H, et al. J Biosci Bioeng, 2009 Jun. PMID 19447332

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RTAP2a may contribute to testicular development and tumorigenesis, and may be a candidate gene for cancer immunotherapy.
      Title: Characterization of a novel rat gene RTAP2a, screened by cross-reactive SEREX, restrictedly expressed in testis.
    Submit: New GeneRIF Correction

    General protein information

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    Preferred Names
    rat testicular antigenic protein 2
    Names
    coiled-coil domain-containing protein 7-like
    testicular antigenic protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001047936.2 → NP_001041401.1  rat testicular antigenic protein 2 isoform 1

      See identical proteins and their annotated locations for NP_001041401.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A0A8I5ZST0, Q5G5J2
      Conserved Domains (1) summary
      pfam15368
      Location:1 → 171
      BioT2; Spermatogenesis family BioT2

    2. NM_001395239.1 → NP_001382168.1  rat testicular antigenic protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      Related
      ENSRNOP00000085761.2, ENSRNOT00000114969.2
      Conserved Domains (1) summary
      PTZ00121
      Location:95 → 843
      PTZ00121; MAEBL; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      73660735..74071499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063278219.1 → XP_063134289.1  rat testicular antigenic protein 2 isoform X11

    2. XM_063278211.1 → XP_063134281.1  rat testicular antigenic protein 2 isoform X4

    3. XM_063278233.1 → XP_063134303.1  rat testicular antigenic protein 2 isoform X24

    4. XM_063278227.1 → XP_063134297.1  rat testicular antigenic protein 2 isoform X18

    5. XM_063278226.1 → XP_063134296.1  rat testicular antigenic protein 2 isoform X17

    6. XM_063278225.1 → XP_063134295.1  rat testicular antigenic protein 2 isoform X16

    7. XM_063278210.1 → XP_063134280.1  rat testicular antigenic protein 2 isoform X3

    8. XM_063278208.1 → XP_063134278.1  rat testicular antigenic protein 2 isoform X1

    9. XM_063278242.1 → XP_063134312.1  rat testicular antigenic protein 2 isoform X33

    10. XM_063278243.1 → XP_063134313.1  rat testicular antigenic protein 2 isoform X34

    11. XM_063278241.1 → XP_063134311.1  rat testicular antigenic protein 2 isoform X32

    12. XM_063278240.1 → XP_063134310.1  rat testicular antigenic protein 2 isoform X31

    13. XM_063278209.1 → XP_063134279.1  rat testicular antigenic protein 2 isoform X2

    14. XM_063278246.1 → XP_063134316.1  rat testicular antigenic protein 2 isoform X37

    15. XM_063278235.1 → XP_063134305.1  rat testicular antigenic protein 2 isoform X26

    16. XM_063278232.1 → XP_063134302.1  rat testicular antigenic protein 2 isoform X23

    17. XM_063278239.1 → XP_063134309.1  rat testicular antigenic protein 2 isoform X30

    18. XM_063278221.1 → XP_063134291.1  rat testicular antigenic protein 2 isoform X13

    19. XM_063278215.1 → XP_063134285.1  rat testicular antigenic protein 2 isoform X7

    20. XM_063278218.1 → XP_063134288.1  rat testicular antigenic protein 2 isoform X10

    21. XM_063278238.1 → XP_063134308.1  rat testicular antigenic protein 2 isoform X29

    22. XM_063278216.1 → XP_063134286.1  rat testicular antigenic protein 2 isoform X8

    23. XM_063278230.1 → XP_063134300.1  rat testicular antigenic protein 2 isoform X21

    24. XM_063278231.1 → XP_063134301.1  rat testicular antigenic protein 2 isoform X22

    25. XM_063278229.1 → XP_063134299.1  rat testicular antigenic protein 2 isoform X20

    26. XM_063278237.1 → XP_063134307.1  rat testicular antigenic protein 2 isoform X28

    27. XM_063278247.1 → XP_063134317.1  rat testicular antigenic protein 2 isoform X38

    28. XM_063278244.1 → XP_063134314.1  rat testicular antigenic protein 2 isoform X35

    29. XM_063278249.1 → XP_063134319.1  rat testicular antigenic protein 2 isoform X40

    30. XM_063278234.1 → XP_063134304.1  rat testicular antigenic protein 2 isoform X25

    31. XM_063278213.1 → XP_063134283.1  rat testicular antigenic protein 2 isoform X5

    32. XM_063278250.1 → XP_063134320.1  rat testicular antigenic protein 2 isoform X41

    33. XM_063278248.1 → XP_063134318.1  rat testicular antigenic protein 2 isoform X39

    34. XM_063278258.1 → XP_063134328.1  rat testicular antigenic protein 2 isoform X49

    35. XM_063278254.1 → XP_063134324.1  rat testicular antigenic protein 2 isoform X45

    36. XM_063278252.1 → XP_063134322.1  rat testicular antigenic protein 2 isoform X43

    37. XM_063278228.1 → XP_063134298.1  rat testicular antigenic protein 2 isoform X19

    38. XM_063278236.1 → XP_063134306.1  rat testicular antigenic protein 2 isoform X27

    39. XM_063278224.1 → XP_063134294.1  rat testicular antigenic protein 2 isoform X15

    40. XM_063278257.1 → XP_063134327.1  rat testicular antigenic protein 2 isoform X48

    41. XM_063278253.1 → XP_063134323.1  rat testicular antigenic protein 2 isoform X44

    42. XM_063278222.1 → XP_063134292.1  rat testicular antigenic protein 2 isoform X14

    43. XM_063278245.1 → XP_063134315.1  rat testicular antigenic protein 2 isoform X36

    44. XM_063278256.1 → XP_063134326.1  rat testicular antigenic protein 2 isoform X47

      Related
      ENSRNOP00000101844.1, ENSRNOT00000162203.1

    45. XM_063278255.1 → XP_063134325.1  rat testicular antigenic protein 2 isoform X46

    46. XM_063278251.1 → XP_063134321.1  rat testicular antigenic protein 2 isoform X42

      Related
      ENSRNOP00000105994.1, ENSRNOT00000154715.1

    47. XM_063278220.1 → XP_063134290.1  rat testicular antigenic protein 2 isoform X12

    48. XM_063278217.1 → XP_063134287.1  rat testicular antigenic protein 2 isoform X9

    49. XM_063278214.1 → XP_063134284.1  rat testicular antigenic protein 2 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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