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    LPP LIM domain containing preferred translocation partner in lipoma [ Pan paniscus (pygmy chimpanzee) ]

    Gene ID: 100985945, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LPP
    Gene description
    LIM domain containing preferred translocation partner in lipoma
    See related
    Ensembl:ENSPPAG00000030332
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan paniscus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See LPP in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanPan1-v2.0_pri (GCF_029289425.2) 2 NC_085926.1 (186022456..186760585)
    RS_2023_05 previous assembly NHGRI_mPanPan1-v1.1-0.1.freeze_pri (GCF_029289425.1) 3 NC_073252.1 (186023356..186765299)

    Chromosome 2 - NC_085926.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC130541393 Neighboring gene receptor transporter protein 2 Neighboring gene BCL6 transcription repressor Neighboring gene uncharacterized LOC129397487 Neighboring gene uncharacterized LOC117979839 Neighboring gene microRNA mir-28 Neighboring gene uncharacterized LOC134730064 Neighboring gene enolase-phosphatase E1-like Neighboring gene tumor protein p63 regulated 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lipoma-preferred partner

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_029289425.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

    Genomic

    1. NC_085926.1 Reference NHGRI_mPanPan1-v2.0_pri Primary Assembly

      Range
      186022456..186760585
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034957879.3 → XP_034813770.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7
      Conserved Domains (5) summary
      cd09350
      Location:416 → 469
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:476 → 528
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:536 → 601
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:4 → 373
      PHA03247; large tegument protein UL36; Provisional
      PRK14086
      Location:191 → 380
      dnaA; chromosomal replication initiator protein DnaA

    2. XM_014344489.5 → XP_014199975.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7
      Conserved Domains (5) summary
      cd09350
      Location:416 → 469
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:476 → 528
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:536 → 601
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:4 → 373
      PHA03247; large tegument protein UL36; Provisional
      PRK14086
      Location:191 → 380
      dnaA; chromosomal replication initiator protein DnaA

    3. XM_063603023.1 → XP_063459093.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7

    4. XM_063603018.1 → XP_063459088.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7

    5. XM_063603019.1 → XP_063459089.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7

    6. XM_063603021.1 → XP_063459091.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7

    7. XM_008978651.5 → XP_008976899.1  lipoma-preferred partner

      See identical proteins and their annotated locations for XP_008976899.1

      UniProtKB/TrEMBL
      A0A2R9AAS7
      Conserved Domains (5) summary
      cd09350
      Location:416 → 469
      LIM1_TRIP6; The first LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09356
      Location:476 → 528
      LIM2_TRIP6; The second LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      cd09436
      Location:536 → 601
      LIM3_TRIP6; The third LIM domain of Thyroid receptor-interacting protein 6 (TRIP6)
      PHA03247
      Location:4 → 373
      PHA03247; large tegument protein UL36; Provisional
      PRK14086
      Location:191 → 380
      dnaA; chromosomal replication initiator protein DnaA

    8. XM_063603020.1 → XP_063459090.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7

    9. XM_063603016.1 → XP_063459086.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7

    10. XM_063603017.1 → XP_063459087.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7

    11. XM_063603022.1 → XP_063459092.1  lipoma-preferred partner

      UniProtKB/TrEMBL
      A0A2R9AAS7
    Nucleotide Protein
    Heading Accession and Version

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