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    sws patatin like phospholipase domain containing sws [ Drosophila persimilis ]

    Gene ID: 6600422, updated on 15-May-2024

    Summary

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    Gene symbol
    sws
    Gene description
    patatin like phospholipase domain containing sws
    Locus tag
    Dper_GL15243
    See related
    EnsemblRapid:LOC6600422
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila persimilis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GL15243; GL15243-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See sws in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825350.1 (408162..419462, complement)

    NW_020825350.1Genomic Context describing neighboring genes Neighboring gene Ubr3 ubiquitin ligase Neighboring gene uncharacterized LOC6600424 Neighboring gene DM7 family protein GG17591 Neighboring gene fascin domain-containing protein singed Neighboring gene protein arginine N-methyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020825350 Unplaced Scaffold Reference DperRS2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lysophospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylcholine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neuropathy target esterase sws
    Names
    Dper\GL15243
    Dper\GL15243-PA
    Swiss cheese
    dper_GLEANR_16188

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DperRS2

    Genomic

    1. NW_020825350.1 Reference DperRS2

      Range
      408162..419462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026992633.1 → XP_026848434.1  neuropathy target esterase sws isoform X4

      UniProtKB/Swiss-Prot
      B4H3U8
      Related
      XP_026848434.1, XM_026992633.1
      Conserved Domains (2) summary
      cd07225
      Location:892 → 1197
      Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
      cd00038
      Location:577 → 676
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    2. XM_026992634.1 → XP_026848435.1  neuropathy target esterase sws isoform X4

      UniProtKB/Swiss-Prot
      B4H3U8
      Related
      XP_026848435.1, XM_026992634.1
      Conserved Domains (2) summary
      cd07225
      Location:892 → 1197
      Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
      cd00038
      Location:577 → 676
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    3. XM_026992631.1 → XP_026848432.1  neuropathy target esterase sws isoform X2

      UniProtKB/Swiss-Prot
      B4H3U8
      Related
      XP_026848432.1, XM_026992631.1
      Conserved Domains (2) summary
      cd07225
      Location:927 → 1232
      Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
      cd00038
      Location:612 → 711
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    4. XM_026992630.1 → XP_026848431.1  neuropathy target esterase sws isoform X1

      UniProtKB/Swiss-Prot
      B4H3U8
      Related
      XP_026848431.1, XM_026992630.1
      Conserved Domains (2) summary
      cd07225
      Location:927 → 1232
      Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
      cd00038
      Location:612 → 711
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...

    5. XM_026992632.1 → XP_026848433.1  neuropathy target esterase sws isoform X3

      UniProtKB/Swiss-Prot
      B4H3U8
      Related
      XP_026848433.1, XM_026992632.1
      Conserved Domains (2) summary
      cd07225
      Location:905 → 1210
      Pat_PNPLA6_PNPLA7; Patatin-like phospholipase domain containing protein 6 and protein 7
      cd00038
      Location:590 → 689
      CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B4H3U8.1 GenPept UniProtKB/Swiss-Prot:B4H3U8

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