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    CG42554 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 8674073, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG42554provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0260756
    Locus tag
    Dmel_CG42554
    See related
    AllianceGenome:FB:FBgn0260756
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG13886; CT33419; Dmel\CG42554
    Old locus tag
    Dmel_CG13886
    Summary
    Predicted to be involved in autophagy. Orthologous to human NRBF2 (nuclear receptor binding factor 2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG42554 in Genome Data Viewer
    Location:
    61D2-61D2; 3-0.5 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (835683..836770)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (835683..836770)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Splicing factor 3b subunit 3 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Jumonji domain containing 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic analyses of essential genes in cytological region 61D1-2 to 61F1-2 of Drosophila melanogaster. Saito M, et al. Mol Genet Genomics, 2002 Dec. PMID 12471442
    2. The Genetic Basis for Variation in Sensitivity to Lead Toxicity in Drosophila melanogaster. Zhou S, et al. Environ Health Perspect, 2016 Jul. PMID 26859824, Free PMC Article
    3. Time-resolved mapping of genetic interactions to model rewiring of signaling pathways. Heigwer F, et al. Elife, 2018 Dec 28. PMID 30592458, Free PMC Article
    4. Genome-wide expression analysis in Drosophila reveals genes controlling circadian behavior. Ceriani MF, et al. J Neurosci, 2002 Nov 1. PMID 12417656, Free PMC Article
    5. Protein phosphorylation changes reveal new candidates in the regulation of egg activation and early embryogenesis in D. melanogaster. Krauchunas AR, et al. Dev Biol, 2012 Oct 1. PMID 22884528, Free PMC Article

    See all (26) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in autophagy IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42554-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      835683..836770
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001169843.2 → NP_001163314.1  uncharacterized protein Dmel_CG42554 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001163314.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      E1JHX0
      Conserved Domains (1) summary
      pfam17169
      Location:4 → 64
      NRBF2_MIT; MIT domain of nuclear receptor-binding factor 2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E1JHX0 E1JHX0

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