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    LOC136431416 transcription factor COE3-like [ Branchiostoma lanceolatum (amphioxus) ]

    Gene ID: 136431416, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC136431416
    Gene description
    transcription factor COE3-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma lanceolatum
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
    Also known as
    coe
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    Genomic context

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    See LOC136431416 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_07 current klBraLanc5.hap2 (GCF_035083965.1) 3 NC_089724.1 (31470115..31563188)

    Chromosome 3 - NC_089724.1Genomic Context describing neighboring genes Neighboring gene bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase-like Neighboring gene uncharacterized LOC136431422 Neighboring gene uncharacterized LOC136431424 Neighboring gene uncharacterized LOC136431425 Neighboring gene T-complex protein 1 subunit eta-like Neighboring gene uncharacterized LOC136431427 Neighboring gene sperm microtubule associated protein 2-like Neighboring gene armadillo repeat-containing protein 3-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_089724.1 Chromosome 3 Reference klBraLanc5.hap2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequencing and analysis of the Mediterranean amphioxus (Branchiostoma lanceolatum) transcriptome. Oulion S, et al. PLoS One, 2012. PMID 22590565, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor COE3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035083965.1-RS_2024_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference klBraLanc5.hap2 Primary Assembly

    Genomic

    1. NC_089724.1 Reference klBraLanc5.hap2 Primary Assembly

      Range
      31470115..31563188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066422783.1 → XP_066278880.1  transcription factor COE3-like isoform X6

      UniProtKB/TrEMBL
      A0A8J9ZS17

    2. XM_066422784.1 → XP_066278881.1  transcription factor COE3-like isoform X6

      UniProtKB/TrEMBL
      A0A8J9ZS17

    3. XM_066422781.1 → XP_066278878.1  transcription factor COE3-like isoform X4

      UniProtKB/TrEMBL
      A0A8J9ZS17

    4. XM_066422787.1 → XP_066278884.1  transcription factor COE3-like isoform X9

      UniProtKB/TrEMBL
      A0A2Z4FRM8

    5. XM_066422779.1 → XP_066278876.1  transcription factor COE3-like isoform X2

    6. XM_066422785.1 → XP_066278882.1  transcription factor COE3-like isoform X7

    7. XM_066422778.1 → XP_066278875.1  transcription factor COE3-like isoform X1

      UniProtKB/TrEMBL
      A0A8K0EM56

    8. XM_066422780.1 → XP_066278877.1  transcription factor COE3-like isoform X3

    9. XM_066422786.1 → XP_066278883.1  transcription factor COE3-like isoform X8

    10. XM_066422788.1 → XP_066278885.1  transcription factor COE3-like isoform X10

    11. XM_066422782.1 → XP_066278879.1  transcription factor COE3-like isoform X5

      UniProtKB/TrEMBL
      A0A8J9ZPJ3
    Nucleotide Protein
    Heading Accession and Version