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    IUM83_00535 Chromodomain-helicase-DNA-binding protein 9 [ Phytophthora cinnamomi ]

    Gene ID: 94314777, updated on 11-Sep-2024

    Summary

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    Gene symbol
    IUM83_00535
    Gene description
    Chromodomain-helicase-DNA-binding protein 9
    Locus tag
    IUM83_00535
    See related
    FungiDB:IUM83_00535; VEuPathDB:IUM83_00535
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Phytophthora cinnamomi (strain: GKB4, nat-host: Persea americana)
    Lineage
    Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora
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    Genomic context

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    See IUM83_00535 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    5

    NW_027150986.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene histidine-tRNA ligase Neighboring gene uncharacterized protein Neighboring gene FAM177 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_027150986.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome of the destructive oomycete Phytophthora cinnamomi provides insights into its pathogenicity and adaptive potential. Engelbrecht J, et al. BMC Genomics, 2021 Apr 26. PMID 33902447, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Chromodomain-helicase-DNA-binding protein 9
    XP_067788550.1
    • alternatively spliced
    XP_067788551.1
    • alternatively spliced

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_027150986.1 Reference assembly

      Range
      1896986..1907904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_067924312.1 → XP_067788551.1  Chromodomain-helicase-DNA-binding protein 9 [Phytophthora cinnamomi]

      Status: PROVISIONAL

    2. XM_067924311.1 → XP_067788550.1  Chromodomain-helicase-DNA-binding protein 9 [Phytophthora cinnamomi]

      Status: PROVISIONAL

    Nucleotide Protein
    Heading Accession and Version