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    LOC121116535 AP-1 complex subunit sigma-1A-like [ Lepeophtheirus salmonis (salmon louse) ]

    Gene ID: 121116535, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC121116535
    Gene description
    AP-1 complex subunit sigma-1A-like
    See related
    EnsemblRapid:LOC121116535
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepeophtheirus salmonis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Hexanauplia; Copepoda; Siphonostomatoida; Caligidae; Lepeophtheirus
    Also known as
    AP1S1
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    Genomic context

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    See LOC121116535 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current UVic_Lsal_1.1 (GCF_016086655.2) 4 NC_052134.1 (7842912..7844270)

    Chromosome 4 - NC_052134.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121116303 Neighboring gene uncharacterized LOC121116741 Neighboring gene lachesin-like Neighboring gene ATP synthase subunit b, mitochondrial-like Neighboring gene uncharacterized LOC121116538

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_052134.1 Chromosome 4 Reference UVic_Lsal_1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-1 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-1 complex subunit sigma-1A-like
    Names
    AP-1 complex subunit sigma-1A
    putative protein, similar to XP_004364378.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lepeophtheirus salmonis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UVic_Lsal_1.1 Primary Assembly

    Genomic

    1. NC_052134.1 Reference UVic_Lsal_1.1 Primary Assembly

      Range
      7842912..7844270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040710795.1 → XP_040566729.1  AP-1 complex subunit sigma-1A-like

      UniProtKB/TrEMBL
      A0A0K2TAC0, D3PJH0
      Related
      XP_040566729.1, XM_040710795.1
      Conserved Domains (1) summary
      cd14831
      Location:3 → 150
      AP1_sigma; AP-1 complex subunit sigma

    2. XM_040710794.1 → XP_040566728.1  AP-1 complex subunit sigma-1A-like

      UniProtKB/TrEMBL
      A0A0K2TAC0, D3PJH0
      Related
      XP_040566728.1, XM_040710794.1
      Conserved Domains (1) summary
      cd14831
      Location:3 → 150
      AP1_sigma; AP-1 complex subunit sigma
    Nucleotide Protein
    Heading Accession and Version

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