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    RASSF5 Ras association domain family member 5 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100415559, updated on 8-Mar-2024

    Summary

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    Gene symbol
    RASSF5
    Gene description
    Ras association domain family member 5
    See related
    Ensembl:ENSCJAG00000018661
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See RASSF5 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 19 NC_071460.1 (30229330..30310770)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 19 NC_048401.1 (31146068..31227530)

    Chromosome 19 - NC_071460.1Genomic Context describing neighboring genes Neighboring gene SLIT-ROBO Rho GTPase activating protein 2 Neighboring gene melanoma inhibitory activity protein 2-like Neighboring gene inhibitor of nuclear factor kappa B kinase subunit epsilon Neighboring gene eukaryotic translation initiation factor 2D Neighboring gene dual specificity tyrosine phosphorylation regulated kinase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ras association domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071460.1 Reference mCalJa1.2.pat.X

      Range
      30229330..30310770
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002760730.4 → XP_002760776.1  ras association domain-containing protein 5 isoform X1

      See identical proteins and their annotated locations for XP_002760776.1

      UniProtKB/TrEMBL
      F7IMG6
      Related
      ENSCJAP00000034688.2
      Conserved Domains (4) summary
      cd00029
      Location:122 → 169
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      pfam16517
      Location:370 → 409
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
      cl00155
      Location:271 → 364
      UBQ; Ubiquitin-like proteins
      cl26464
      Location:39 → 133
      Atrophin-1; Atrophin-1 family

    2. XM_008985565.3 → XP_008983813.1  ras association domain-containing protein 5 isoform X2

      See identical proteins and their annotated locations for XP_008983813.1

      UniProtKB/TrEMBL
      F7IMI4
      Related
      ENSCJAP00000034677.2
      Conserved Domains (2) summary
      pfam16517
      Location:218 → 257
      Nore1-SARAH; Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain
      cl00155
      Location:119 → 212
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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