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    LOC9306067 uncharacterized zinc finger CCHC domain-containing protein At4g19190 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9306067, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9306067
    Gene description
    uncharacterized zinc finger CCHC domain-containing protein At4g19190
    Locus tag
    ARALYDRAFT_329616
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9306067 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302549.1 (10340776..10343629, complement)

    NW_003302549.1Genomic Context describing neighboring genes Neighboring gene glycine-rich protein A3 Neighboring gene pentatricopeptide repeat-containing protein At4g19191, mitochondrial Neighboring gene WAT1-related protein At4g19185 Neighboring gene probable apyrase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302549 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized zinc finger CCHC domain-containing protein At4g19190
    Names
    putative protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302549.1 Reference v.1.0 Primary Assembly

      Range
      10340776..10343629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021018775.1 → XP_020874434.1  uncharacterized zinc finger CCHC domain-containing protein At4g19190

      Conserved Domains (3) summary
      pfam10197
      Location:48 → 83
      Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
      pfam15288
      Location:212 → 232
      zf-CCHC_6; Zinc knuckle
      cl25887
      Location:490 → 591
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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