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    LOC9299263 oleoyl-acyl carrier protein thioesterase 2, chloroplastic [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9299263, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC9299263
    Gene description
    oleoyl-acyl carrier protein thioesterase 2, chloroplastic
    Locus tag
    ARALYDRAFT_333029
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9299263 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302547.1 (1062165..1064334, complement)

    NW_003302547.1Genomic Context describing neighboring genes Neighboring gene uncharacterized CRM domain-containing protein At3g25440, chloroplastic Neighboring gene putative F-box protein At1g47790 Neighboring gene uncharacterized LOC110227092 Neighboring gene uncharacterized LOC110226961

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302547 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyl carrier activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fatty acyl-[ACP] hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oleoyl-acyl carrier protein thioesterase 2, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302547.1 Reference v.1.0 Primary Assembly

      Range
      1062165..1064334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002863231.2 → XP_002863277.1  oleoyl-acyl carrier protein thioesterase 2, chloroplastic

      See identical proteins and their annotated locations for XP_002863277.1

      UniProtKB/TrEMBL
      D7MVG0
      Conserved Domains (2) summary
      cd00586
      Location:83 → 199
      4HBT; 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. ...
      pfam01643
      Location:80 → 363
      Acyl-ACP_TE; Acyl-ACP thioesterase
    Nucleotide Protein
    Heading Accession and Version

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