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    Dag1 dystroglycan 1 [ Rattus rattus (black rat) ]

    Gene ID: 116907572, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Dag1
    Gene description
    dystroglycan 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
    human mouse all
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    Genomic context

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    See Dag1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) 8 NC_046161.1 (99533799..99594412, complement)

    Chromosome 8 - NC_046161.1Genomic Context describing neighboring genes Neighboring gene acylaminoacyl-peptide hydrolase Neighboring gene bassoon presynaptic cytomatrix protein Neighboring gene small nuclear ribonucleoprotein Sm D2-like Neighboring gene nicolin 1, tubulin polyglutamylase complex subunit Neighboring gene aminomethyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046161.1 Chromosome 8 Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables laminin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in morphogenesis of an epithelium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle attachment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nerve development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of dystroglycan complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of dystrophin-associated glycoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dystroglycan
    Names
    alpha-dystroglycan

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046161.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      99533799..99594412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032910608.1 → XP_032766499.1  dystroglycan

      Conserved Domains (4) summary
      cd11303
      Location:60 → 161
      Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
      PRK14971
      Location:311 → 402
      PRK14971; DNA polymerase III subunit gamma/tau
      pfam05454
      Location:604 → 893
      DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
      pfam18424
      Location:180 → 302
      a_DG1_N2; Alpha-Dystroglycan N-terminal domain 2

    2. XM_032910605.1 → XP_032766496.1  dystroglycan

      Conserved Domains (4) summary
      cd11303
      Location:60 → 161
      Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
      PRK14971
      Location:311 → 402
      PRK14971; DNA polymerase III subunit gamma/tau
      pfam05454
      Location:604 → 893
      DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
      pfam18424
      Location:180 → 302
      a_DG1_N2; Alpha-Dystroglycan N-terminal domain 2

    3. XM_032910606.1 → XP_032766497.1  dystroglycan

      Conserved Domains (4) summary
      cd11303
      Location:60 → 161
      Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
      PRK14971
      Location:311 → 402
      PRK14971; DNA polymerase III subunit gamma/tau
      pfam05454
      Location:604 → 893
      DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
      pfam18424
      Location:180 → 302
      a_DG1_N2; Alpha-Dystroglycan N-terminal domain 2

    4. XM_032910604.1 → XP_032766495.1  dystroglycan

      Conserved Domains (4) summary
      cd11303
      Location:60 → 161
      Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
      PRK14971
      Location:311 → 402
      PRK14971; DNA polymerase III subunit gamma/tau
      pfam05454
      Location:604 → 893
      DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
      pfam18424
      Location:180 → 302
      a_DG1_N2; Alpha-Dystroglycan N-terminal domain 2
    Nucleotide Protein
    Heading Accession and Version

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