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    LOC9661852 E3 ubiquitin protein ligase RIN2 [ Selaginella moellendorffii ]

    Gene ID: 9661852, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC9661852
    Gene description
    E3 ubiquitin protein ligase RIN2
    Locus tag
    SELMODRAFT_42433
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Selaginella moellendorffii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Lycopodiopsida; Selaginellales; Selaginellaceae; Selaginella
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    Genomic context

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    See LOC9661852 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    100 current v1.0 (GCF_000143415.4) Unplaced Scaffold NW_003314353.1 (17959..20691, complement)

    NW_003314353.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At4g01130-like Neighboring gene GDSL esterase/lipase At1g54790 Neighboring gene proteasome subunit beta type-1 Neighboring gene DNA-directed RNA polymerase III subunit RPC8 Neighboring gene probable amino-acid acetyltransferase NAGS2, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003314353 Unplaced Scaffold Reference v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of plant-type hypersensitive response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin protein ligase RIN2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Selaginella moellendorffii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v1.0

    Genomic

    1. NW_003314353.1 Reference v1.0

      Range
      17959..20691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024662721.1 → XP_024518489.1  E3 ubiquitin protein ligase RIN2 isoform X1

      UniProtKB/TrEMBL
      D8SZY1
      Conserved Domains (3) summary
      cd14422
      Location:543 → 580
      CUE_RIN3_plant; CUE domain found in plant E3 ubiquitin protein ligases RIN2, RIN3 and similar proteins
      cd16479
      Location:335 → 380
      RING-H2_synoviolin; RING finger, H2 subclass, found in synoviolin and similar proteins
      cl26329
      Location:65 → 383
      zf-rbx1; RING-H2 zinc finger domain

    2. XM_024662722.1 → XP_024518490.1  E3 ubiquitin protein ligase RIN2 isoform X2

      UniProtKB/TrEMBL
      D8SZY1
      Conserved Domains (3) summary
      cd14422
      Location:445 → 482
      CUE_RIN3_plant; CUE domain found in plant E3 ubiquitin protein ligases RIN2, RIN3 and similar proteins
      cl17238
      Location:237 → 282
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl26329
      Location:193 → 285
      zf-rbx1; RING-H2 zinc finger domain
    Nucleotide Protein
    Heading Accession and Version

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