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    Lcn4 lipocalin 4 [ Mus musculus (house mouse) ]

    Gene ID: 16821, updated on 9-Dec-2024

    Summary

    Official Symbol
    Lcn4provided by MGI
    Official Full Name
    lipocalin 4provided by MGI
    Primary source
    MGI:MGI:102668
    See related
    Ensembl:ENSMUSG00000026919 AllianceGenome:MGI:102668
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Vnsp2; A630045M08Rik
    Summary
    Predicted to enable odorant binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human OBP2A (odorant binding protein 2A) and OBP2B (odorant binding protein 2B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Lcn4 in Genome Data Viewer
    Location:
    2 A3; 2 18.99 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (26557686..26561294, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (26667674..26671282, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3364 Neighboring gene small nucleolar RNA host gene 7, opposite strand Neighboring gene predicted gene 2240 Neighboring gene STARR-seq mESC enhancer starr_03993 Neighboring gene calcyclin binding protein pseudogene Neighboring gene predicted gene, 39773

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

    Markers

    Clone Names

    • MGC141052

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    enables odorant binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables pheromone binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables small molecule binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    vomeronasal secretory protein 2
    Names
    VNSP II
    vomeronasal secretory protein II

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010695.1NP_034825.1  vomeronasal secretory protein 2 precursor

      See identical proteins and their annotated locations for NP_034825.1

      Status: PROVISIONAL

      Source sequence(s)
      D38581
      Consensus CDS
      CCDS15810.1
      UniProtKB/Swiss-Prot
      Q62472
      UniProtKB/TrEMBL
      Q24JQ8
      Related
      ENSMUSP00000028283.2, ENSMUST00000028283.2
      Conserved Domains (1) summary
      pfam00061
      Location:33170
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      26557686..26561294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)