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    stx18 syntaxin 18 [ Anolis carolinensis (green anole) ]

    Gene ID: 100557437, updated on 8-Mar-2024

    Summary

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    Gene symbol
    stx18
    Gene description
    syntaxin 18
    See related
    Ensembl:ENSACAG00000011038
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anolis carolinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Dactyloidae; Anolis
    Orthologs
    human mouse all
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    Genomic context

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    See stx18 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current rAnoCar3.1.pri (GCF_035594765.1) 5 NC_085845.1 (104460765..104522343)
    102 previous assembly AnoCar2.0 (GCF_000090745.1) Unplaced Scaffold NW_003338783.1 (731482..798990, complement)

    Chromosome 5 - NC_085845.1Genomic Context describing neighboring genes Neighboring gene TRPM8 channel-associated factor homolog Neighboring gene msh homeobox 1 Neighboring gene uncharacterized LOC107983190 Neighboring gene neuronal vesicle trafficking associated 1 Neighboring gene zinc finger and BTB domain containing 49

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_035594765.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAnoCar3.1.pri

    Genomic

    1. NC_085845.1 Reference rAnoCar3.1.pri

      Range
      104460765..104522343
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003224147.4 → XP_003224195.1  syntaxin-18

      UniProtKB/TrEMBL
      H9GH39
      Related
      ENSACAP00000010812.3
      Conserved Domains (2) summary
      cd15850
      Location:249 → 307
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:4 → 100
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus
    Nucleotide Protein
    Heading Accession and Version

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